Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00353 ATGGCGTCTTCTGACAAGGATGTCGAAGAACAGCTTTTGGAAGCTGGCAATAAGATTGTTGACCCTCCTACTTCAGTTGAAGAACTTCTACCTCTTCTCGACAAAATAGAGAGTTTGCTGGCGAGGGTTGAACAATCCCCCTCAAAATCAATGCAGAGTGCGCTTACTCCATCACTGAAAGCCCTGATTTCTGATCAACTTCTAAGACATTCGGATATTGATGTCAAAGTTGCAGTTGCTACATGCATTAGTGAAATAACTAGGATCACTGCACCTGATGCCCCTTACAATGATGAGCAAATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCTAGTCGATCATATGCAAAGAGGGCATCCATTCTTGAAACCGTTGCAAAGGTCAGATCATGTGTGGTCATGCTGGATTTGGAATGTGATGGATTGATCATTGAGATGTTCCAACATTTCCTTAAGACAGTAAGAGATTATCACCCAGAGAATGTATTTTCGTCAATGGAGACAATTATGAGCCTTGTCTTAGAAGAAAGTGAAGACATAGCTGTAGAGCTCCTCTCTCCGATCTTAGAAAGTGTGAAGAAGGACAATGAGGAAATTCTACCTATTGCTCGGAAGTTAGGAGAGAGAGTTCTTGATAACTGTTCTACCAAGCTCAAACCTTATTTGGTTCAAGCTGTAAAAAGCTTAGGAATTTCTTTTGATGATTATAGTGATATTATTGCTTCCATATGCAAAGATCTTTCTGGCTCTCTTGAGCCAAGCAATCTTAACGATGCTGGTGAAAACGTGGTTGCTGAGAGCCAGTGCGTTAGAACGTCTGGGGATGAGGTTGAAGAAAACCAGACAGAAGTGGCCACACCTGAGAGAGTTGACTCGGCCGTTGAGAAACATCATGACTCAGTTAAGAGCAATGGAGCTGCACAGGGGGGTGAATATGTCTCTGTCTCTAGTTTGGTGCACAAGAAGGAAGAACATGGTGGTCAGGAGTGCAAAGAGGTGAAATCACCCAAAAGTCCTGAACCTGCTAATTTGGGATCTGAGAAGGCTAGCAATGTGAAGGAAAGATCTGAAAAGCTCCCTAGGAAAAGAGGCAGAAAACCTAAACAATCCGCAAAATCTACAGCAGTTCCTCATGTTGATGCTCTGAAGGAATCTGAGAATCAACCAGAACACGAAAGCCGTAGTGACCATCCTAGTTCTCCTCGGGGAGACCGGACTGCTGAAAACTTGCCTTCAGAAAATGCGGTTGATGCCAAGCCTTCTTCACCCAAGGCTATGGAGATTCAATCAGCAAACATTGCTTCATCTTCACTTAGTGGAAGCGTTCCCAGTGAGTGTAACAATAAGTCTGTACAGGCAAAGAAGAAGGGAAACCCAGCTAAAGTGGTGGTGGCATCATCTGCAGAAGTTTCAAAAAAAGCATCTGATGGAATGAATAAGTCAGGAGCAAAGATCGTTTCACATGGTGAAGAGAAGGCTCCAGCTGGAGTTTCTGATGATACTAAGACTGCAGCTGAAGATGCAGCAGAAAGGGAAAGTGATACTGCTAGTGATTCTGAAGTTAAGACGTTGAAACAGTCCGCTAGGAAGGGAGGTGGAGCCAGTAAGAGTAGTGGTGAATCTTTAAAACAATCGGAGGCTAAGAGAAAGAAGGGATTGTTGAAATCTATTTCTGGAAAAACCATTAAAAATTTGTCAGATGATGATGATAAAAAGGAAGCAACACCTGTGCTGAAACCAACCTCAAAAACCACCAAAGATGAGAAGATCTTGGACAAGACTACAACACCAGCTTCCAAGAGGAAACGAACTCCGAGCAAAGAAAAAGAGTCTGAAACCAAGGATTTTGATGAATCTTTGGTTGGTTCAAAGATAAAAGTGTGGTGGCCAAAGGATCGCATGTTTTATGCAGGTGTAGTCGAATCTTTTGATCCTGGAAAAAGGAAGCACAAGGTTTTATACACGGATGGAGATGAAGAAATACTAAATCTTAAAAAGGAGAGATGGGAATATATTGACGACGGCTCTGGATCTGAACGGGAGGAAACAGCAGATCTAGTGAGATCAGAATCTGCAGCAGAGACACCTCAAAAGAAAAAGGCGAAACTAAATGCCAACGAGGCTGCTAAGCGAGGAAAGATGGACGTCTCACCAAAAAAGGGTGGAGCGACTTCCTCCGGCAAATCCAAAGGTGTAGCTACAAAAACTAATCAGAGTAGTGGCAGCAAAGTTGAAGGAAAGTCGAAAGAGAATACCCCTAAGGTTGGAAGACCTGCAAATGTAAGCAAATCCAAGGATCAAAACACTCCTAAAACTGTCAGCAAAGCTGGTAGCACAGGACCGAAAATTGTTAGCAAGTCGAAGAATGACGACGCTGAATCACACAAGACTAGCAAATTGAAGGATAATGAGACAACTACACCTACTGTTGTTGCAAAGTCCAAGCAAGACGTGTTGAAGACAGGGAAGTCCAAACAAGAGACTCCAAAAACTCCTGCAATTTCAAAGGGAAAGTCTACTACTAAAACAGGCGATAAATCTAATAGTGCCAATCTCTCCCCCAAGGTTAAGTTCACATCTTCAAAATCAAAAGAAAGTGGAGATTTGAAGAATTCTGCTGCTCCTGGGAAAACAATGGAGAATTCAAAGGGAAAGTCACTAAATTCATCCAATGATCAGGGCAGTGAATCTAAGCCGGGAAAGAAAAGAAGAATAGAGTCAAAAGGTTGA 2754 42.45 MASSDKDVEEQLLEAGNKIVDPPTSVEELLPLLDKIESLLARVEQSPSKSMQSALTPSLKALISDQLLRHSDIDVKVAVATCISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAKRASILETVAKVRSCVVMLDLECDGLIIEMFQHFLKTVRDYHPENVFSSMETIMSLVLEESEDIAVELLSPILESVKKDNEEILPIARKLGERVLDNCSTKLKPYLVQAVKSLGISFDDYSDIIASICKDLSGSLEPSNLNDAGENVVAESQCVRTSGDEVEENQTEVATPERVDSAVEKHHDSVKSNGAAQGGEYVSVSSLVHKKEEHGGQECKEVKSPKSPEPANLGSEKASNVKERSEKLPRKRGRKPKQSAKSTAVPHVDALKESENQPEHESRSDHPSSPRGDRTAENLPSENAVDAKPSSPKAMEIQSANIASSSLSGSVPSECNNKSVQAKKKGNPAKVVVASSAEVSKKASDGMNKSGAKIVSHGEEKAPAGVSDDTKTAAEDAAERESDTASDSEVKTLKQSARKGGGASKSSGESLKQSEAKRKKGLLKSISGKTIKNLSDDDDKKEATPVLKPTSKTTKDEKILDKTTTPASKRKRTPSKEKESETKDFDESLVGSKIKVWWPKDRMFYAGVVESFDPGKRKHKVLYTDGDEEILNLKKERWEYIDDGSGSEREETADLVRSESAAETPQKKKAKLNANEAAKRGKMDVSPKKGGATSSGKSKGVATKTNQSSGSKVEGKSKENTPKVGRPANVSKSKDQNTPKTVSKAGSTGPKIVSKSKNDDAESHKTSKLKDNETTTPTVVAKSKQDVLKTGKSKQETPKTPAISKGKSTTKTGDKSNSANLSPKVKFTSSKSKESGDLKNSAAPGKTMENSKGKSLNSSNDQGSESKPGKKRRIESKG 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1562008 1573009 - CmaCh05G003530.1 Cma05g00353 294471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00353 917 MobiDBLite consensus disorder prediction 570 625 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 883 903 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 280 310 - -
Cma05g00353 917 Pfam Sister chromatid cohesion protein PDS5 protein 28 232 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 763 793 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 433 462 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 794 810 - -
Cma05g00353 917 Gene3D - 614 676 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 730 754 - -
Cma05g00353 917 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 2 873 IPR039776 GO:0007064
Cma05g00353 917 MobiDBLite consensus disorder prediction 391 411 - -
Cma05g00353 917 PANTHER TRANSCRIPTIONAL REGULATOR 2 873 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 680 917 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 680 725 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 833 876 - -
Cma05g00353 917 MobiDBLite consensus disorder prediction 278 625 - -
Cma05g00353 917 Gene3D - 38 274 IPR011989 -
Cma05g00353 917 MobiDBLite consensus disorder prediction 325 344 - -
Cma05g00353 917 SUPERFAMILY ARM repeat 26 276 IPR016024 -
Cma05g00353 917 MobiDBLite consensus disorder prediction 501 533 - -
Cma05g00353 917 SUPERFAMILY Tudor/PWWP/MBT 627 669 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00353 - - - csv:101205018 1371.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00353 Cma12g00683 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01401 Cma-Chr1:9903775 Cma05g00353 Cma-Chr5:1562008 7.27E-32 dispersed
Cma05g00353 Cma-Chr5:1562008 Cma17g00894 Cma-Chr17:6782089 9.12E-97 dispersed
Cma01g01533 Cma-Chr1:10726550 Cma05g00353 Cma-Chr5:1562008 5.57E-07 wgd
Cma12g00363 Cma-Chr12:1837681 Cma05g00353 Cma-Chr5:1562008 0 wgd
Cma05g00353 Cma-Chr5:1562008 Cma08g00591 Cma-Chr8:3364006 5.15E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002456 2 4 2 1 1 1 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 3 1 3 1 4 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00353 Cma_Chr05 FPKM 22.306383 23.855656 21.49016 23.805513 42.30727 42.713402 42.221523 23.852922 22.445255 20.417213