Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00357 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGGCATTGGGGCTCCTGGGTCTCCGAGATTCGTCACCCTTTACTGAAAACCAGAATTTGGCTGGGCACGTTCGAAACGGCTGAAGACGCTGCCAGAGCCTACGACGAAGCTGCTCGCCTAATGTGCGGTCCTCGAGCCAGAACCAATTTCCCTTTCAACGCAAATGACTCCAATTCCTCTTCTTCTTCTTCTAAACTCCTCTCTGCTAATTTGACCGCCAAACTCCACCGTTGCTACATGGCGTCGCTTCATTTGACCAACCCATCGCCGCAGAAACCCGCCGCGAATAACCCCATGACGGCCGAGAAGAAAAGGGCCGTGAAAAAGACACAAATGGAGACTGCCCATCAGCCGTTTGTGGCTCTGGAAGAGGATCATATTGAACAGATGATCGAGGAGTTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTACCGCCGCCGCCGCCGCCGCCTCAGCCGTTTTGA 510 53.53 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNANDSNSSSSSSKLLSANLTAKLHRCYMASLHLTNPSPQKPAANNPMTAEKKRAVKKTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPPPPPPQPF 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1600464 1601349 - CmaCh05G003570.1 Cma05g00357 294475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00357 169 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cma05g00357 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 126 - -
Cma05g00357 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 113 158 - -
Cma05g00357 169 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cma05g00357 169 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cma05g00357 169 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cma05g00357 169 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cma05g00357 169 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cma05g00357 169 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cma05g00357 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 113 158 - -
Cma05g00357 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 126 - -
Cma05g00357 169 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01479 Cma05g00357 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00357 Cma-Chr5:1600464 Cma17g00889 Cma-Chr17:6760886 1.74E-60 dispersed
Cma05g00357 Cma-Chr5:1600464 Cma05g00358 Cma-Chr5:1604135 1.10E-63 tandem
Cma12g00356 Cma-Chr12:1805054 Cma05g00357 Cma-Chr5:1600464 1.61E-80 wgd
Cma05g00357 Cma-Chr5:1600464 Cma08g00596 Cma-Chr8:3388485 8.35E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35046 PF00847 AP2 6.40E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00357 - - cpep:111805765 271.166