Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00358 ATGCCCAGACCACAACAAAGATTCCGCGGTGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCAAGGGCGCGCACTAACTTCCCTTACGACGCCTCCCTGTCGCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCCTCCTTGCAACTCACCAAGCAATCCTCCTCTGCTGCACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAGCCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGGGAGCCGTTGGATGATGATCATATTCAACAAATGATCGAGGAGCTCCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGCCTGCAGGCTCAGCCCATTTGA 540 57.96 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTSGIAPVGVEADVTSTKKVKLESVDRGEPLDDDHIQQMIEELLDYGGIELRSAAGLQAQPI 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1604135 1604999 - CmaCh05G003580.1 Cma05g00358 294476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00358 179 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cma05g00358 179 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cma05g00358 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 172 - -
Cma05g00358 179 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cma05g00358 179 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cma05g00358 179 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cma05g00358 179 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cma05g00358 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 172 - -
Cma05g00358 179 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cma05g00358 179 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01479 Cma-Chr1:10416824 Cma05g00358 Cma-Chr5:1604135 3.45E-62 dispersed
Cma05g00358 Cma-Chr5:1604135 Cma17g00889 Cma-Chr17:6760886 1.02E-62 dispersed
Cma09g00461 Cma-Chr9:2028621 Cma05g00358 Cma-Chr5:1604135 3.72E-29 dispersed
Cma05g00357 Cma-Chr5:1600464 Cma05g00358 Cma-Chr5:1604135 1.10E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35047 PF00847 AP2 1.90E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00358 - - cmax:111491817 331.643