Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00364 ATGGCCAAGAGGTTTAAAAGAAGGAAGGCATTGGCTGATCTGAGAGTGGAGGAGTCTGTACTTTTGAAGGAAAGGTTAGATCTTAAAAAGGAGCTGGATAGCCTACATGCGACGTTCAAGGAACAGACAACTAACAACCAGAAGTTGAAGAAAATTAAGCTCAATCTGAATTCTGATGCATCATCAGATCGTGTTTGGGATGAGTTGAAGCCAGTAGCTTCCAATCAATGGTGCCGAGACGCGGATCCTACACCCGACAACATTCTTCCTGCAACTTCGCCGATACAAACTGTACCTGGATTGCAGGAGACACAGGAGACAAATTCAATGGAAAGTGGTGTGGCAGTGGCAGAGATAAGAGGATTCCTACCAATCTCCGCCCTTACAAAGCAAGGTGGAACGAAACTGCCTTCTCACAATAAGCAGTTTACCGGGCTGTTTTCATCGTCTGAAAACCGCTTTACCTCTCCTTCTCCGTTCTTAAGGGCACGTTTGTACAGTATATCTCTTCATCTTTCTCTGTCTCCTGCTTCCCCCCACTATGGCTGTATAATTTTTTACTACTTGGAAGTTACGGAATCTGCTTCTTTACCGGCGGTGGTATTTATGGCTTTCCGCAACCAACTCTCTCAGGACCTTCCTCTTCATTATGAGAACCAGTCTCAACCGGAACGGCCGCTTTCTGCTAACACGCTGCGCTCGATTTTATCTGATCAACTGACTGACCACTCTCAGGCCGACGATGGTTCTAAGCCTGAACATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAGCACCTCATTCTCACTTCTCTGATGAGACCACGGCGACAGCTGCGGATAACGTTGACACCGACTTCCTTAATCTTCACACGACTGCTGCCAATTCTGCTGTCTCTCACCCGTCGGGTCAATGGCTCTCCCGCGCGATCCTCCATCGCGATCATAGCGATGTTTTAGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACCACTTTGTCGCGCGAATCGGATGATTTGAAGAATAACAGCAGCGGCGGGGGTGGGGAGGGTGCGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCGTATGGTGGAGATGCGGTGATGAATTGGCAGAATGCGCGGTTTAAGGCGGAAATTCTGGCGCATCCTCTTTACGAGCAGCTACTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCAGTGGACCAGTTGCCGAGAGTAGATTCTCAGCTTGCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGTTTGGTCACCGTTCTCAGCCCATAGCCGGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTATTACTTTGCTCTTTTAAAGAACAACTCCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTATACGCCTGCTGGGAAATTGAACAGTCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACTGGTGCTACAATGTCTGATGATGACGAAGACCAGACAGATAGCGATGCTAATTTGTTTGATGGAAGTTTTGAGGGTCATGATGCTATGGGATTTGGTCCTCTTATCCCAACAGATAGTGAGAGATCCCTTATGGAAAGGGGATACAAAGAGAAAATTTTAGATATCAGGGAGGAAATTTTGCGAAAAAGGAGAGCAGGTAAGCTTCCTGGTGGCACCACGTCCGTCTTGAAAGCTTGGTGGCAATCACATTCTAATTGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAAGAAACTGGGCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGGTATAGCTACTGA 1941 47.66 MAKRFKRRKALADLRVEESVLLKERLDLKKELDSLHATFKEQTTNNQKLKKIKLNLNSDASSDRVWDELKPVASNQWCRDADPTPDNILPATSPIQTVPGLQETQETNSMESGVAVAEIRGFLPISALTKQGGTKLPSHNKQFTGLFSSSENRFTSPSPFLRARLYSISLHLSLSPASPHYGCIIFYYLEVTESASLPAVVFMAFRNQLSQDLPLHYENQSQPERPLSANTLRSILSDQLTDHSQADDGSKPEHPLQSTPNWLNSALLRNQAPHSHFSDETTATAADNVDTDFLNLHTTAANSAVSHPSGQWLSRAILHRDHSDVLDEVADAADAMIGATTLSRESDDLKNNSSGGGGEGANNSDDVAVESDGNEGAYGGDAVMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRVDSQLARSQNVAAKYSSFGHRSQPIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQTDSDANLFDGSFEGHDAMGFGPLIPTDSERSLMERGYKEKILDIREEILRKRRAGKLPGGTTSVLKAWWQSHSNWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRYSY 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1621023 1630929 + CmaCh05G003640.1 Cma05g00364 294482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00364 646 SUPERFAMILY Homeodomain-like 569 632 IPR009057 -
Cma05g00364 646 MobiDBLite consensus disorder prediction 344 374 - -
Cma05g00364 646 MobiDBLite consensus disorder prediction 626 646 - -
Cma05g00364 646 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 247 644 - -
Cma05g00364 646 CDD homeodomain 580 630 IPR001356 GO:0003677
Cma05g00364 646 ProSiteProfiles 'Homeobox' domain profile. 566 629 IPR001356 GO:0003677
Cma05g00364 646 Gene3D - 565 639 - -
Cma05g00364 646 SMART HOX_1 568 633 IPR001356 GO:0003677
Cma05g00364 646 SMART KNOX2_2 445 500 IPR005541 GO:0003677|GO:0005634
Cma05g00364 646 SMART KNOX1_2 389 433 IPR005540 GO:0003677|GO:0005634
Cma05g00364 646 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 247 644 - -
Cma05g00364 646 MobiDBLite consensus disorder prediction 344 360 - -
Cma05g00364 646 Pfam KNOX2 domain 450 499 IPR005541 GO:0003677|GO:0005634
Cma05g00364 646 Pfam Homeobox KN domain 586 625 IPR008422 GO:0003677|GO:0006355
Cma05g00364 646 MobiDBLite consensus disorder prediction 499 520 - -
Cma05g00364 646 Pfam KNOX1 domain 392 431 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01485 Cma-Chr1:10450414 Cma05g00364 Cma-Chr5:1621023 0 dispersed
Cma05g00364 Cma-Chr5:1621023 Cma09g00430 Cma-Chr9:1876271 0 dispersed
Cma17g00886 Cma-Chr17:6746071 Cma05g00364 Cma-Chr5:1621023 3.55E-06 dispersed
Cma12g00351 Cma-Chr12:1779420 Cma05g00364 Cma-Chr5:1621023 0 wgd
Cma05g00364 Cma-Chr5:1621023 Cma08g00598 Cma-Chr8:3397007 3.53E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35048 PF03791 KNOX2 4.70E-19 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00364 - - csv:101213817 709.909