Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00382 ATGCTTAGGCTCTTTTCACCTCAATACTTGGTCATCGCCGTCTTCACCTTTGTTGGGTCTCTCCTTTTTGCTCTCTTTGGAGGGTTTTTTGGTGGCCTGCTGCCCACAGTCGAGTTTTTGGGTTTCATCAATCGCTACCCATGGCTAAGATCTTTGGTTTTACTCAAAAATGATGATTTGGTGTGTGATTCATCGGGGTATGCTCACTCGAGTAGTGAACTCGTCACAGAAAGTGAGGATTTTTTCCCTGGGGCACCAATCTATCCGAACCCCAAGGATACGAGTCTCTTTTTGTCCCTTGATCGTCGTGTGGATGTTTATTATCCGCTTCGTAAGAGGTCCAGAGTCAGCGCCCCATTTGTGCCTAGTGAAGAAATACTCAAAAAGAAGGAGGCATCTATTGAAGTTCTTCCAGATGAGTGCCTCTTTGAAATCTTCAGGCGCTTGCCTGATAGAGAGACGAGGAGCCTCTGTGCTTGCGTTTCTAAACGTTGGCTCATGCTTTTAAGCAGCATAAGTGGTAATGAATTTCATAGTTCGAAGCCTAAGAACGAGGCAGAGAATGATGGATGTCTTTCACGAAACTTGGAAGGGAAGAAGGCAACAGATGTAAGACTAGCTTCCATAGCAGTAGGAACTGCTAGTTGTGGTGGCTTGGGCAAGCTTTCGATTCGTGGAGGCAATCATGGCTGTGAGGTTACAAACGTTGGCCTTAAGGCTGTTGCCTATGGATGTCCTTCCCTTAAAGCTATTTCTTTGTGGAATCTGTCTTCTACAGGAGATGAAGGTCTGATTGAGATTGCCAAGGGATGTCGACTCCTAGAGAAGCTCGATTTATGTCAATGTCCTGGAATTTCAAACAAAGCTTTGCTGGAACTTGCCAAAAACTGCCCGAATCTGACTGATATAACAATAGAATCTTGTGCAAACATTGGCAATGAAAGCCTTCAAGCTATTGGACAATATTGTTCCAATTTGAAGTCTATTTCGATCCGAGACTGCCCCCTTATTGGGGATCAAGGAATAGTGAGCTTGTTCTCGTCCACCTCGTACACCTTAAGCAAGGTGAAGCTCCAGAGTCTAAATGTCACTGACGTGTCGCTTGCTGTCATCGGACATTACGGCAGGGCAGTTACAGACCTTATGCTTACTGGCCTGACAAATGTTACTGAGAGGGGATTTTGGGCCATGGGCAATGGTCATGGTTTGCAAAAGTTGCAATCATTTACACTCGTGTCTTGCCATGGTGTGACCGATGTCGGGCTACAATCCATTGGGAAGGGATGCCCGAACTTAAGGAAGTTCTGCTTGCGAAAATGTTCGTTCTTGTCCGACAAGGGAATGATCTCTTTCGCTCAGGCTGCTACCTCCATTAAGAACTTACAATTGGAGGAGTGTCACAGGATAACCCAGTTGGGTTTATTTGGTACCATCTTAAACTGTGGTGCAAAGTTAAAGGCTCTTTCTCTAGTACACTGCTTAGGGATCAAGGATTCGAGCCTGAACTTGCCTTCAGCGTCCTCGTGCAAGTCGCTTCAGTCATTATCCATCTCCAATTGCCCTGGGTTTGGTAATGCAAGCTTATCTCTTCTGAGCAAGCTATGCCCCCAGCTTCAGCATGTGGATTTATCTGGGCTCAATGGTATTACAGATTCTGGGCTACTGCCATTGTTTAAGAACTGTGAAGCAGGATTGGTGAAGGTCAATCTAAGTGGCTGTATGAATTTAACCGATAAAGTGATTACATCCTTGACCAAGCTTCATGGTTGGACTCTTGAATTGCTCAATCTTGATGGTTGTTTGAAGATAACTGATTCAAGCTTAGTGGCCATTGCAGAGAACTGTCCATTGCTCAATGATCTCAACGTTTCCAAGTGTCGTATCACTGATTTTGGAGTTGCAGCACTTGCTCAAGCCAACCAGTTCAACCTGCAGATCCTTTCTATGTTTGGATGTTCTGCCTTAACTGACAAGAGCTTGCTTGCTCTTGTAAAACTGGGCGACTCCCTCCTCGGTTTGAATCTTAAACACTGCAACTCAATCAGCACCACGAGTATGGAGCTCCTTTTGGCTCAGCTCCATCGATGCAACATCCTCTACTGA 2103 45.32 MLRLFSPQYLVIAVFTFVGSLLFALFGGFFGGLLPTVEFLGFINRYPWLRSLVLLKNDDLVCDSSGYAHSSSELVTESEDFFPGAPIYPNPKDTSLFLSLDRRVDVYYPLRKRSRVSAPFVPSEEILKKKEASIEVLPDECLFEIFRRLPDRETRSLCACVSKRWLMLLSSISGNEFHSSKPKNEAENDGCLSRNLEGKKATDVRLASIAVGTASCGGLGKLSIRGGNHGCEVTNVGLKAVAYGCPSLKAISLWNLSSTGDEGLIEIAKGCRLLEKLDLCQCPGISNKALLELAKNCPNLTDITIESCANIGNESLQAIGQYCSNLKSISIRDCPLIGDQGIVSLFSSTSYTLSKVKLQSLNVTDVSLAVIGHYGRAVTDLMLTGLTNVTERGFWAMGNGHGLQKLQSFTLVSCHGVTDVGLQSIGKGCPNLRKFCLRKCSFLSDKGMISFAQAATSIKNLQLEECHRITQLGLFGTILNCGAKLKALSLVHCLGIKDSSLNLPSASSCKSLQSLSISNCPGFGNASLSLLSKLCPQLQHVDLSGLNGITDSGLLPLFKNCEAGLVKVNLSGCMNLTDKVITSLTKLHGWTLELLNLDGCLKITDSSLVAIAENCPLLNDLNVSKCRITDFGVAALAQANQFNLQILSMFGCSALTDKSLLALVKLGDSLLGLNLKHCNSISTTSMELLLAQLHRCNILY 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1680166 1683626 - CmaCh05G003820.1 Cma05g00382 294500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00382 700 SUPERFAMILY RNI-like 402 697 - -
Cma05g00382 700 Pfam Leucine Rich repeat 322 345 IPR001611 GO:0005515
Cma05g00382 700 Pfam Leucine Rich repeat 615 637 IPR001611 GO:0005515
Cma05g00382 700 Pfam Leucine Rich repeat 535 557 IPR001611 GO:0005515
Cma05g00382 700 Gene3D Ribonuclease Inhibitor 503 559 IPR032675 -
Cma05g00382 700 SUPERFAMILY F-box domain 133 171 IPR036047 GO:0005515
Cma05g00382 700 PANTHER - 83 691 - -
Cma05g00382 700 PANTHER UNCHARACTERIZED 83 691 - -
Cma05g00382 700 Gene3D Ribonuclease Inhibitor 560 655 IPR032675 -
Cma05g00382 700 Gene3D Ribonuclease Inhibitor 350 502 IPR032675 -
Cma05g00382 700 Gene3D Ribonuclease Inhibitor 128 349 IPR032675 -
Cma05g00382 700 SMART LRR_CC_2 562 587 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 297 322 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 429 454 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 641 666 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 271 296 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 245 270 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 589 614 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 403 428 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 216 244 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 323 348 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 615 639 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 535 560 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 482 507 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 455 480 IPR006553 -
Cma05g00382 700 SMART LRR_CC_2 509 534 IPR006553 -
Cma05g00382 700 Pfam F-box-like 135 168 IPR001810 GO:0005515
Cma05g00382 700 SUPERFAMILY RNI-like 231 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00382 K14515 EBF1_2; EIN3-binding F-box protein - csv:101216639 1115.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00382 Cma12g00338 CCT
Cma05g00382 Cma09g00460 CCT
Cma05g00382 Cma09g00460 ECH
Cma05g00382 Cma12g00338 ECH
Cma01g01503 Cma05g00382 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00382 Cma-Chr5:1680166 Cma05g01290 Cma-Chr5:9837002 0 dispersed
Cma11g01358 Cma-Chr11:8981074 Cma05g00382 Cma-Chr5:1680166 1.43E-15 dispersed
Cma01g01503 Cma-Chr1:10555713 Cma05g00382 Cma-Chr5:1680166 0 wgd
Cma12g00338 Cma-Chr12:1717390 Cma05g00382 Cma-Chr5:1680166 0 wgd
Cma05g00382 Cma-Chr5:1680166 Cma08g00600 Cma-Chr8:3406097 7.32E-07 wgd
Cma05g00382 Cma-Chr5:1680166 Cma09g00460 Cma-Chr9:2023376 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00382 Cma_Chr05 FPKM 32.008579 37.586754 18.081188 19.058517 17.952396 18.419159 16.745502 38.432739 34.60685 42.028084