Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00383 ATGCCGCGCCTGCTTCATGGGACGCTTCAAGCCGATATATATGGAATCGACAAGCTTCGAACTGGATGTCCTATTTTCTGCGGGAAGGATAAAAGGGTAAGTCTATTTCATTGTGAGATTACTGGAAAAAGCCAGTCGGCCAAAAAGTTTCTTGCTGGAGTGAAGAGACGCATTCTTTGCTGTCCCGAGATTGTTGGCTCTCAAATGTACGCAACACTCGATCTTGATAAGGCCCGAGTTGGCCGAACGAGAATCGTGGATCAGCCAAACAGTCCTCAATGGATCGAGCATTTTCGTATATACTGTGCTCATACACTGTCACATGTTATATTCACAATAAAAGATGGAAGTGTAGTTGGTGCAACATTAATTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATATGTATATGAGAGATGGGTTGAAATATTAGATGAAGACCGCAAGCCATTATATGGTCGTCCTAAAATCCATGTAAAGTTACAATTTTCAAGTGTTATTGAAGACAGGAACTGGTCCCAAGGAATCCGGGATCCGAAGTTCGGTGGTGTACCATTCACATTCTTCAAGCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAAGATGCTCATGTTTTAAACAACTTCCTCCCTCGAGTTGGGTTGTCAAGAGGGAATTTTCATGAAGTTCATAGGTGTTGGGAGGACATTTTCGATGCAATTAGCAATGCGAAACACTTGATTTATATAACTGGTTGGTCTGTTTATACTGAAATAACATTGATAAGAGACAGAGAAAGAAGACAAACAGGAGAGGATATTACTCTTGGGGAACTGCTGAAGAAGAAAGCAGAGGAAGGTGTGACCGTTTTGCTTCTTGTTTGGGATGACAGAACTTCCATTGAAGAGTTCAAACGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGAAGAGTATTTCAGGGGCTCGAAGGTTCGATGCGTTCTGTGCCCACGGAATCCTGATGTTGGTAGAACCATAATTCAGGGGTTTGAGACAGCAACCACGTTTACTCACCACCAAAAAACATTGGTGCTTGATAGTGAAATAGCTGGTGGAGGAACAGGGAATAGAAGGATCGTGAGCTTTGTTGGTGGTATTGATCTATGTGATGGGAGATATGATACACCAAAACACCCTTTGTTTTCTACTCTAGATTCAATCCACTATAAAGATTTTCACCAGCCTAACTTTTCAGGCTCTTCAATAAGGAAAGGCGGTCCTCGGGAACCATGGCATGACATCCATTGCCGCCTGGAAGGGCCAGTTGCTTGGGATGTTTTGTACAATTTTGAGCAAAGATGGCGAAAGCAAGTTGGAAATAACTCGTTGATTCCAATGCATAAGTTTGAAGAAATCATTACTCGCCCAGTAATGGCATTACCATCAGACGACCCCGACACATGGAATGTTCAAATATTTCGATCTATCGACGGTGGTGCTGTTGAGGGCTTTCCAGAGATACCTGAAGATGCTTCTAAACTAGGCCTTGTAAGTGGGAAGGATAGTGTTATAGATAGGAGTACTCAAGATGCTTATATTAACGCCATTCGCCGAGCTAAAAATTTCATATACATTGAGAATCAGTATTTCCTTGGAAGCTCTTATGGGTGGAAATCAAATGGTGTGAGGGTAGAAAGCATCAATGCTTTGCATCTTATTCCAAAGGAGATTTCATTGAAGATTGTAAGCAAGATTGAAGCTGGAGAGAGGTTTACAGCATATATTGTGATTCCAATGTGGCCGGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAGAGGAGAACCTTAGACATGATGTACACTGATATAACTCAAGCTCTTCGGAAGAAGGGTCTCGACGCAAATCCTAGAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATATTCCACCGGAGAAACCAGAACCCAACTCGGATTACGCTCGTGCTCAAGAGTTTCGACGTTTTATGATCTATGTTCATTCTAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCAAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATAGCCATGGGGGCTTTTCAGCCGCATCACTTGGCATCTAGTGAGCCTGCAAGAGGTCAAATCTATGGCTTCCGAGTGGCTCTCTGGTACGAACATCTTGGTCTGTTTGACAAAGTCTTCCATAACCCGGAGACTGAAGACTGCGTCCAATTCGTAAACAAGCTCGCCCTAGAAAACTGGCAATTTTACTCGGACGATACCTTTGATGGCGATCTTCCTGGTCATCTTCTTTCCTACCCCATCGAAGTAGGCCCCAATGGGTCGATCTCGGCGCTTAAAAAATTTGAACTTTTCCCTGACACGAAGGCTCGTGTTCTTGGGCAATTGTCTGATTATCTACCTCCAAATCTGACCACTTGA 2484 43.0 MPRLLHGTLQADIYGIDKLRTGCPIFCGKDKRVSLFHCEITGKSQSAKKFLAGVKRRILCCPEIVGSQMYATLDLDKARVGRTRIVDQPNSPQWIEHFRIYCAHTLSHVIFTIKDGSVVGATLIGRAYVPVEDIIKGYVYERWVEILDEDRKPLYGRPKIHVKLQFSSVIEDRNWSQGIRDPKFGGVPFTFFKQRWGCKVSLYQDAHVLNNFLPRVGLSRGNFHEVHRCWEDIFDAISNAKHLIYITGWSVYTEITLIRDRERRQTGEDITLGELLKKKAEEGVTVLLLVWDDRTSIEEFKRDGLMATHDQETEEYFRGSKVRCVLCPRNPDVGRTIIQGFETATTFTHHQKTLVLDSEIAGGGTGNRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYKDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDVLYNFEQRWRKQVGNNSLIPMHKFEEIITRPVMALPSDDPDTWNVQIFRSIDGGAVEGFPEIPEDASKLGLVSGKDSVIDRSTQDAYINAIRRAKNFIYIENQYFLGSSYGWKSNGVRVESINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDITQALRKKGLDANPRDYLTFFCLGNREKKRTGEYIPPEKPEPNSDYARAQEFRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASSEPARGQIYGFRVALWYEHLGLFDKVFHNPETEDCVQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSISALKKFELFPDTKARVLGQLSDYLPPNLTT 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1686515 1689703 - CmaCh05G003830.1 Cma05g00383 294501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00383 827 PIRSF PLD_plant 1 827 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cma05g00383 827 SUPERFAMILY Phospholipase D/nuclease 171 458 - -
Cma05g00383 827 SMART C2_3c 53 143 IPR000008 -
Cma05g00383 827 Pfam Phospholipase D C terminal 745 816 IPR024632 -
Cma05g00383 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 345 383 IPR001736 GO:0003824
Cma05g00383 827 Gene3D Endonuclease Chain A 496 720 - -
Cma05g00383 827 ProSiteProfiles C2 domain profile. 1 144 IPR000008 -
Cma05g00383 827 SMART pld_4 345 383 IPR001736 GO:0003824
Cma05g00383 827 SMART pld_4 673 700 IPR001736 GO:0003824
Cma05g00383 827 Gene3D Endonuclease Chain A 220 470 - -
Cma05g00383 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 673 700 IPR001736 GO:0003824
Cma05g00383 827 PANTHER PHOSPHOLIPASE D ALPHA 3 3 827 - -
Cma05g00383 827 Pfam C2 domain 67 146 IPR000008 -
Cma05g00383 827 PANTHER PHOSPHOLIPASE D 3 827 IPR015679 -
Cma05g00383 827 Gene3D C2 domain 61 178 IPR035892 -
Cma05g00383 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 67 167 IPR035892 -
Cma05g00383 827 Pfam Phospholipase D Active site motif 346 383 IPR001736 GO:0003824
Cma05g00383 827 Pfam Phospholipase D Active site motif 674 700 IPR001736 GO:0003824
Cma05g00383 827 CDD C2_plant_PLD 1 166 - -
Cma05g00383 827 SUPERFAMILY Phospholipase D/nuclease 498 755 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00068 Cma-Chr1:294236 Cma05g00383 Cma-Chr5:1686515 0 dispersed
Cma05g00383 Cma-Chr5:1686515 Cma08g00939 Cma-Chr8:5850444 0 dispersed
Cma17g00856 Cma-Chr17:6619325 Cma05g00383 Cma-Chr5:1686515 7.37E-08 dispersed
Cma05g00383 Cma-Chr5:1686515 Cma08g00678 Cma-Chr8:4167206 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00383 K01115 - csv:101207900 1513.05