Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00384 ATGGGATCGGAAGAAAGTGAAAAGATAGTGGTAACTCAAGTAAGCATTGGAGGATTTGACAGTGATGTTAAAGCACAAGATCTTATGAGTTATCTTGAATCTGAAATTGGGCTTGTGGACAGGTGTAGATTGAAAACTTCATGGACACCTCCAGAATCGTACCCAGATTTTGACATCGTTAATGTCGCCGATGTAATAAAATCTGATGATTATAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGCCTTACCTGACTCAGCTGCTGGGGCTCTACATGCCGCAGGGCGTAATGAGCTATTTTTGAACGATAGATTGTTGAAGGTGAGTTTGGGGCCTGAGAGTCCATACCATGTAAATCAGAGGCGAAGGACTAAGGTTCCCTTTAAGTTATCTAATGTGCTTGTAGATATAGGGAACTTAACTTGTCAAGATGGGTTTTCGGTTGCTTGGAGAGGACCTTCCAGTGGAATGGATTTTCTTGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAGGGATACCGCGTTCTCTTTTAAAGATAACAACAAGCATACAGTGTTAAAGTGTGATTACAAGGTGGAGTTCTTGGTGAGGGACATTAATCAGATCAAAAGATATACAGATATATCATGTTATGTTATTCTCTTGCAACTTACTTCGTCGCCCTGCATTTGGTATAGAACTGCAGATGATGATATCGCCAAATCAGTTCCGTATGATTTGTTGGACGACGACGATCCATGGATCCGGACAACAGATTTCACGATAAGTGGGGCTATTGGCCGTTGTAATACGTACAGAGTTTCAGTTCCACCCCGGTATGGTATCAAGCTGAATAATGCCATGAATTATTTAAAAGAACAAAGAGTGCACCAGGCGTCCCTCAAACGGCCTCCCAAGATCCTGAATGAACCAGATTATGGGGTGCAAATTACTGATCACTTCTTTTGCATCCATTACAAAGAAGACATATCCTTTGAACTGTTATTTCTAGTAAATGCAGTAATGCACAAAGGGATAATCAACCAGCACCAAATGACTGATAGATTCTTTGATCTGCTAAGAAACCAGCCCAATGAAGTTAGTTTGGCTGCTTTAAGTCATATTCATACATATAGACATCCTGTACCGGACGCCTGTAAGAGGCTAAAACATGTACAAGAATGGCTGTTGAAGAACCCTAGGCTTTGGAAAAGATCTAAAGAGCTGGTTGATATCATTGAAATCAGGAGATTAGTAATAACTCCATCAAAAGCGTACTGTTTTCCACCTGAAGTTGAACTCTCCAATAGGGTTTTAAGAAGGTTCAAGGATGTTGCTGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCACATGTTTATACCTATTATGTTGCTCCTATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAGACTAAAATATTTGGGAGGATGAAACATATTCTGAAACATGGATTTTACTTGTGTGGTCGGAAATACTCCTTTTTGGCGTACTCGTCCAACCAACTGAGAGACCAATCAGCTTGGTTCTTTTCTGAATGCAAAGATGTTACTGTTGATAGTATTTTACGTTGGATGGGGAGATTTACGAATAAAAATGTTGCGAAGTGTGCTGCTAGAATTGGTCAGTGTTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCGATCACCAACTTCCTGACGTTGAGAGGAATGACTATATTTTCTCTGATGGGATTGGTACCATTACTCCTGATCTAGCGCAGGAAGTTGCAGACAAATTAAAATTGGGTGGGAGCCCACCCTGTGCTTACCAAATTAGATATGCAGGTTGCAAAGGTGTTGTTGCCTCTTGGCCATCCAAGGGTGACGGGATCAGACTTGCTTTAAGACCAAGCATGAACAAATTTCAATCAGATCATAGAATCTTGGAGATTTGTTCATGGACTAGATTTCAACCAGGTTTTCTTAATAGACAGATTATAACCCTTCTTTCTACACTAAATGTTCCTGATGAAAATTTCTGGAGTATGCAGGAGACCATGGTTTCAAAACTGGATAGAATGATCACTGATACAAATGTGGCGTTTGATGTTCTCACGGCATCCTGTGCTGAGCAAGGAAATGCAGCAGCAATTATGTTGAGTGCTGGTTTCGAACCTCAAACTGAACCTCATCTAAGGGGCATGCTAATGTGTATAAGAGCAGCGCAGCTCTGGGGCCTTCGGGAAAAAGCTAGGATCTTTGTTACTGATGGGAGGTGGTGTATGGGGTGCTTCGACGAGAGCGCCGTGCTACAAGAAGGCCAATGCTTCATTCAAGTATCCACTCCACTGCTTGAGAGGTGTTTCTCCAAGCATGGGTCTCTCTTTGATGAGACAAAGAACAATCTTACTGTGATAAGAGGGACTGTAGTCATAGCCAAAAATCCATGCCTTCATCCTGGAGATGTGAGAATTCTTGAAGCAGTTGATGCTCCTGAGTTGCATCATTTATACGATTGCCTCGTGTTTCCTCAAAATGGTGAACGACCCCATACAAACGAAGCTTCTGGAAGTGATTTGGATGGGGATCTCTACTTTATTACTTGGGATGAAAATCTTATTCCACCTAGTAGAAAAAGTTGGCCACCTATGAACTATGTTGCAGCAGAAGTAAAGACTCTTACACGCGAAGTTACGCGATTGGATATAATGGAGTTCTTCGCCAAAAATATGATTAATGAGAGTCTTGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGTGAGTATGGAGCTTTGGATGAGAACTGCATTAAATTATCTGAATTAGCTGCCACAGCAGTTGATTTCCCCAAAACAGGGAAGATTGTGACCATGCCTCCCCACTTAAAACCAAAACTATATCCAGATTTTATGGGAAAACAAGCTACTCAATCATACAAGTCCACCAAAATTCTGGGAAGAATGTATCGCCGAATTAGAGATGTATACGATGAAGATATGATCACGGCATGCGAGCTAAATTTTACTCCTGGCGATGTCTATTACGACGTTGATCTTGAAGTTGCAGGAGCAGCAGATTTCATAGCAGAAGCATGGAATCAAAAGTGCTCATATGACGGTCAGCTGAGCGGTTTACTGGGACAATATAAAGTTAGTAGGGAAGAAGAGATTGTCACTGGGCATATTTGGTCCATGCCAAAGTACAGTAGCAGGAAGCAAGGAGAGCTGAAGGAGAAGCTCAAGCATTCTTATACCACTCTTAAGAAAGAGTTCAGGCAAGTTTTTGAGAACATTGGCCCAGAGTTTGAGCAACTCACTGACGATGAAAGGAATGCGTTGTATGAAAGAAAGGCATCTGCTTGGTATCAGGTGACATACCATCCAACTTGGTTGAAGAAATCAATGGAGCTACGAGAACCCGACATTGCCGAGGCCACCCCAATGTTAAGCTTTCCTTGGGTTGCTGTTGATTATCTTGCACGGATCAAGATCAAATGCCGGAAGATGAAAAGCGTCGACCCAACAAAGCCGATTAACTCATTGGCGAGCTATCTTTCCGATCGGATGCGACCATTGTGA 3600 41.86 MGSEESEKIVVTQVSIGGFDSDVKAQDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIVNVADVIKSDDYKKVVPHAFVHFALPDSAAGALHAAGRNELFLNDRLLKVSLGPESPYHVNQRRRTKVPFKLSNVLVDIGNLTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTRDTAFSFKDNNKHTVLKCDYKVEFLVRDINQIKRYTDISCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTTDFTISGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLKRPPKILNEPDYGVQITDHFFCIHYKEDISFELLFLVNAVMHKGIINQHQMTDRFFDLLRNQPNEVSLAALSHIHTYRHPVPDACKRLKHVQEWLLKNPRLWKRSKELVDIIEIRRLVITPSKAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKDVTVDSILRWMGRFTNKNVAKCAARIGQCFSSTYATIEVPRNMVDHQLPDVERNDYIFSDGIGTITPDLAQEVADKLKLGGSPPCAYQIRYAGCKGVVASWPSKGDGIRLALRPSMNKFQSDHRILEICSWTRFQPGFLNRQIITLLSTLNVPDENFWSMQETMVSKLDRMITDTNVAFDVLTASCAEQGNAAAIMLSAGFEPQTEPHLRGMLMCIRAAQLWGLREKARIFVTDGRWCMGCFDESAVLQEGQCFIQVSTPLLERCFSKHGSLFDETKNNLTVIRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSRKSWPPMNYVAAEVKTLTREVTRLDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIKLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKQATQSYKSTKILGRMYRRIRDVYDEDMITACELNFTPGDVYYDVDLEVAGAADFIAEAWNQKCSYDGQLSGLLGQYKVSREEEIVTGHIWSMPKYSSRKQGELKEKLKHSYTTLKKEFRQVFENIGPEFEQLTDDERNALYERKASAWYQVTYHPTWLKKSMELREPDIAEATPMLSFPWVAVDYLARIKIKCRKMKSVDPTKPINSLASYLSDRMRPL 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1690664 1694548 - CmaCh05G003840.1 Cma05g00384 294502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00384 1199 CDD RRM_SF 14 110 - -
Cma05g00384 1199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 114 IPR000504 GO:0003723
Cma05g00384 1199 Pfam RNA dependent RNA polymerase 417 999 IPR007855 GO:0003968
Cma05g00384 1199 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1196 - -
Cma05g00384 1199 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1196 IPR007855 GO:0003968
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00384 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101217108 2238.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00384 Cma-Chr5:1690664 Cma10g00138 Cma-Chr10:619940 5.97E-176 dispersed
Cma05g00384 Cma-Chr5:1690664 Cma15g00901 Cma-Chr15:4636912 1.42E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g477 . . . . Bpe02g01245 . . . Cmo05g00385 . . Cma05g00384 . . . . . Bhi04g00961 . . . Hepe10g0255 . . . . . . . . . Cone4ag1794 . . . . . . . . Blo18g00027 Bda01g01000 . . . Bma01g01277 . . . . . . . . Cpe11g00329 . . . . . . . . Cla08g01331 Cam08g1793 Cec08g1372 . Clacu08g1487 . . Lsi08g01203 . Chy03g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006584 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00384 Cma_Chr05 FPKM 3.532222 3.730461 4.234939 4.139121 5.69758 6.014798 6.337464 9.382938 7.551658 8.458565