Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00386 ATGATCCTTGCAGATTGCAGGAGAGTGGGAGCATTTGAGTTCGCAAATGTAAGATCCGAAGGGGAATGTATAAGCTTGTGGTACACTTGGGTAGCTTCTGGAGTCTTAACATTTTCTCTCCAGCTAACTTACTTTTCCTTTGCAGACTTCGTGAAATCGCAACCAAACTCTTTAAGTCGAGTTCATAGCAGGCTACCAGAAATGGGAGAAACAAGAGAGAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGGTTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATTCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGCAAAACTGCTGTTTTTGTTCTGTCAACGCTGCAGCAGATTGACCCTGTTGCTGGTCAAGTCTCTGCACTAGTTCTGTGCCATACGAGGGAGCTTGCATACCAGATCTGTCACGAATTTGAGAGGTTCAGCACTTATCTTCCTGATCTGAAGGTTGCTGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGACAAGGACCTATCTCTGAAGAACGTCCGACATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCCCTTGATATGCGGAGAGACGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTCTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGATGACGAGGCAAAGCTGACCTTGCATGGTCTTGTCCAGCATTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGCTGAATGATCTCCTTGATGCTTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGAGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAAGAAGAGAGGTTGACTCGATACAAGGGCTTTAAAGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATTTGCACAGGGTCGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACCTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTCGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACAGTATTGCCATCATAGACGTAGAGATCATCAGCATAGAAATCGGCTACCTGGGTTGGTGA 1533 43.25 MILADCRRVGAFEFANVRSEGECISLWYTWVASGVLTFSLQLTYFSFADFVKSQPNSLSRVHSRLPEMGETRENEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSIAIIDVEIISIEIGYLGW 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1695936 1702730 + CmaCh05G003860.1 Cma05g00386 294504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00386 510 CDD SF2_C_DEAD 330 459 - -
Cma05g00386 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Cma05g00386 510 SMART helicmild6 369 450 IPR001650 -
Cma05g00386 510 Gene3D - 109 325 IPR027417 -
Cma05g00386 510 CDD DEADc_DDX39 112 319 - -
Cma05g00386 510 Pfam DEAD/DEAH box helicase 138 303 IPR011545 GO:0003676|GO:0005524
Cma05g00386 510 Gene3D - 326 494 IPR027417 -
Cma05g00386 510 SMART ultradead3 132 333 IPR014001 -
Cma05g00386 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 490 IPR001650 -
Cma05g00386 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 461 IPR027417 -
Cma05g00386 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 317 IPR014001 -
Cma05g00386 510 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 94 489 - -
Cma05g00386 510 Pfam Helicase conserved C-terminal domain 343 450 IPR001650 -
Cma05g00386 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 94 489 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00386 Cma12g00336 CCT
Cma05g00386 Cma12g00336 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00386 Cma-Chr5:1695936 Cma06g01089 Cma-Chr6:7351210 3.93E-80 dispersed
Cma12g00336 Cma-Chr12:1704730 Cma05g00386 Cma-Chr5:1695936 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00386 K12812 - csv:101217346 820.461