Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00388 ATGGCTCTTCAACACAATAAGCCAACAACAATGGCTCTCCTCTTCTTCTTAGTCTTCGAGCGCATTTACGCAGCTCGTGCAGACATTGGCACAGCCATAGCGTACGGCCCTCCATATCTCCCCACTCGATGTAATGGAAACAACATCGACCAGTTTCCACCTGGCAACTTCTTTGTAGCGGTCAACGAAGGGTTATGGGACAACGGCGCTGCATGCGGTCGTCGATATAGATTACGATGTTTAAGCGGTCGAAATCACCCATGCAAGACCGACATCATCGAAGTTCAAGTCGTGAACTTTTGCCCTAAGTCACCATGTCCCTCTTCCTTTCTCATGTCTAAAGAGGCCTTCTCCGCCATCTCTCGTCTCTCTAGTGCCAAACTCAACGTCGAATATATTGAGATATAA 408 48.04 MALQHNKPTTMALLFFLVFERIYAARADIGTAIAYGPPYLPTRCNGNNIDQFPPGNFFVAVNEGLWDNGAACGRRYRLRCLSGRNHPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFSAISRLSSAKLNVEYIEI 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1709018 1709635 - CmaCh05G003880.1 Cma05g00388 294506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00388 135 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 11 134 - -
Cma05g00388 135 Gene3D - 28 135 IPR036908 -
Cma05g00388 135 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 11 134 - -
Cma05g00388 135 Pfam Lytic transglycolase 60 132 IPR009009 -
Cma05g00388 135 SUPERFAMILY Barwin-like endoglucanases 16 132 IPR036908 -
Cma05g00388 135 SMART dpbb_1 59 132 IPR007112 -
Cma05g00388 135 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 30 135 IPR007112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00388 - - - cmax:111492001 283.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00388 Cma-Chr5:1709018 Cma12g00318 Cma-Chr12:1629061 1.36E-25 dispersed
Cma06g01723 Cma-Chr6:10562492 Cma05g00388 Cma-Chr5:1709018 1.14E-26 transposed
Cma12g00332 Cma-Chr12:1693681 Cma05g00388 Cma-Chr5:1709018 1.72E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g462 Blo01g01381 . Bda01g00739 Bda03g00066 . . . . Cmo05g00387 . . Cma05g00388 . . Sed01g1369 . . Bhi04g00975 Tan02g2713 Cmetu03g1797 . Hepe10g0261 . Lcy13g1780 . . . . . . . . . . . . . . Cme03g01622 . . . . . . . . . . . . . . Car05g00329 Cpe11g00332 . . . . . . . . Cla08g01325 Cam08g1787 Cec08g1365 Cco08g1493 Clacu08g1481 . Cre08g1270 . . Chy03g01129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00388 Cma_Chr05 FPKM 2.267898 4.203358 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0