Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00390 ATGCAGGAGCAAGCGACGAGTTCCGCCGCCGCTAGCTCTTTACCTTCGAGCAGTGAAAGATCGTCCAGCTCTGCCCTTCACCTCGAATTGAAAGAAGGAATGGAGAGTGATGAAGAGATCCGGAGAGTGCCGGAGATAGGCGGCGAATCCGCCGGAACATCGGCGTCCGGCAGGGAGACCGGTTCGTTGGCCGGTCCGGACCGAGTTCAGGTTTCTCGGGAGAGTCAAAGGAAGAGAGGGAGAACTCCGGCTGACAAAGAAAGCAAGAGGTTGAAGAGATTGCTGAGAAATAGAGTATCAGCACAGCAAGCGAGGGAGAGGAAAAAGGCGTATTTGAATGACTTAGAGATAAGGGTGAAGGATTTGGAGAAGAAGAACTCAGAACTTGAAGAAAGGCTTTCCACTTTACAGAATGAGAATCAGATGCTTAGACAAATTTTGAAGAACACAACGGCAAGTCGGAGAAGTGGGGAGTGA 477 50.73 MQEQATSSAAASSLPSSSERSSSSALHLELKEGMESDEEIRRVPEIGGESAGTSASGRETGSLAGPDRVQVSRESQRKRGRTPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEIRVKDLEKKNSELEERLSTLQNENQMLRQILKNTTASRRSGE 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1712978 1714681 - CmaCh05G003900.1 Cma05g00390 294508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00390 158 CDD bZIP_HY5-like 90 141 - -
Cma05g00390 158 MobiDBLite consensus disorder prediction 30 45 - -
Cma05g00390 158 Gene3D Single helix bin 108 149 - -
Cma05g00390 158 Coils Coil 84 153 - -
Cma05g00390 158 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 155 IPR044280 GO:0000981|GO:0045944
Cma05g00390 158 MobiDBLite consensus disorder prediction 1 107 - -
Cma05g00390 158 Pfam bZIP transcription factor 86 147 IPR004827 GO:0003700|GO:0006355
Cma05g00390 158 SUPERFAMILY Leucine zipper domain 89 147 IPR046347 GO:0003700|GO:0006355
Cma05g00390 158 MobiDBLite consensus disorder prediction 1 24 - -
Cma05g00390 158 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 155 - -
Cma05g00390 158 SMART brlzneu 85 149 IPR004827 GO:0003700|GO:0006355
Cma05g00390 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700|GO:0006355
Cma05g00390 158 MobiDBLite consensus disorder prediction 71 107 - -
Cma05g00390 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700|GO:0006355
Cma05g00390 158 PRINTS cAMP response element binding (CREB) protein signature 84 100 - -
Cma05g00390 158 PRINTS cAMP response element binding (CREB) protein signature 102 122 - -
Cma05g00390 158 PRINTS cAMP response element binding (CREB) protein signature 122 139 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00390 Cma12g00329 CCT
Cma01g01495 Cma05g00390 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00390 Cma-Chr5:1712978 Cma06g00038 Cma-Chr6:215083 1.92E-07 dispersed
Cma01g01495 Cma-Chr1:10499105 Cma05g00390 Cma-Chr5:1712978 1.31E-47 wgd
Cma12g00329 Cma-Chr12:1688568 Cma05g00390 Cma-Chr5:1712978 8.60E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35050 PF00170 bZIP_1 2.00E-14 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00390 K16241 - csv:101218051 266.929