Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00393 ATGGTAGAAATTCATGAAGTTGAACAAATTTGTGGAAATGTTATGATGTCTATAAGAGATAGACTGAAACGACGACCTCCTGTTAATAGAGAACCTAACATCTATCGAGTTCCCAAACTGCTACGCGAGATGAATAATAAAGCCTATATCCCTCAAGTCATTTCCATCGGTCCATTTTACCATCGTAGTCCAGATTTGATAACCACAGAACACTATAAAGTTCAAGGCCTTAATAACTTTCTAATTCGTCTGAGTAATAAGATGGAATGCTTGAATAACCCGAGGAATCCATTAGAGGTCCTTGTGAGAAATACTCAAAGTTATGTGGAAGAATATCGAAATTGCTATGCTGAACCCATCAACATGAATGACAAGGATTTTATTGAAATGATGATCGTGGATGGTGGTTTTATAGTGGAGTTTTTGATACTATATTATGGCCAATACAAACCAAATGTCTTTCCTACCCTTTCAAGCAACGTAGATTATTCATTCTACAAAAGAATCCCTGATATAGATCTTGATTTGATTAAGTTAGAAAATCAAATCCCTTTCTCTGTTCTTGAACGTATGTTTAAACTTATACTAGAAGATGATACCTCCCTCTCCATTATACATCTTGCATACGTGTTTTTGCAACATGGATTGATACATCCATATGAACTTTCTACTCCTTTGCCGAGAACATCGAATCACTTCGTCGATTTCTTAAGCTTGTACTTTGTTGTTCCCAAGGAGTCTTCTGTGATCAACATTGATGAAACCGATTTTCCTATTCCTCCATCAATAACTAAGCTCTGCCAGGCCGGTATCATCATCAAGAAAGCAGAAGATGCCAAATTTGTGATGGACCTTAGCTTTAAAAATGGAGTTTTCAAAATTCCACCTTTACATATCGATGATAACTTTGAAACCATGATTCGAAACTTGATAGCATTTGAGCAAATTTCCTTAGCAAAGGAGAGCAAGTGTACCCAATATATCACATTCATGGATTATTTGATAAGCACAGAGGAAGACGTGAATTTACTTGAGAATGCCGGAATTATAATCAACGATATTGGAGGCAGTGCTAAAGAAGTTTCAAAACTGTTTAACGATCTCTGTAAATTTGCCACAGTCCCATATGATACCCACTTCAACTATATCAGTGCTGGCTTAAATGAGCACTGCAATAGACGTTGGAACAACGCAAAAGCTATACTCAAACGTGATTATTTTTATACACCATGGGCTTGTGTCGCTGCTTTTGGTGCTATCTCTGTTATTATTCTGGCCTTCCTTCAAACTATATTTACTGGTATATCTACATTTCAGAAATAG 1323 36.43 MVEIHEVEQICGNVMMSIRDRLKRRPPVNREPNIYRVPKLLREMNNKAYIPQVISIGPFYHRSPDLITTEHYKVQGLNNFLIRLSNKMECLNNPRNPLEVLVRNTQSYVEEYRNCYAEPINMNDKDFIEMMIVDGGFIVEFLILYYGQYKPNVFPTLSSNVDYSFYKRIPDIDLDLIKLENQIPFSVLERMFKLILEDDTSLSIIHLAYVFLQHGLIHPYELSTPLPRTSNHFVDFLSLYFVVPKESSVINIDETDFPIPPSITKLCQAGIIIKKAEDAKFVMDLSFKNGVFKIPPLHIDDNFETMIRNLIAFEQISLAKESKCTQYITFMDYLISTEEDVNLLENAGIIINDIGGSAKEVSKLFNDLCKFATVPYDTHFNYISAGLNEHCNRRWNNAKAILKRDYFYTPWACVAAFGAISVIILAFLQTIFTGISTFQK 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1725330 1726652 + CmaCh05G003930.1 Cma05g00393 294511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00393 440 PANTHER BNAC04G53230D PROTEIN 10 435 - -
Cma05g00393 440 Pfam Plant protein of unknown function 34 425 IPR004158 -
Cma05g00393 440 PANTHER BNAC04G53230D PROTEIN 10 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00393 - - - cmos:111462528 445.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00393 Cma-Chr5:1725330 Cma19g00341 Cma-Chr19:3592053 2.07E-148 dispersed
Cma19g00343 Cma-Chr19:3619477 Cma05g00393 Cma-Chr5:1725330 4.42E-17 dispersed
Cma19g00344 Cma-Chr19:3620211 Cma05g00393 Cma-Chr5:1725330 3.36E-15 dispersed
Cma05g00391 Cma-Chr5:1717957 Cma05g00393 Cma-Chr5:1725330 1.40E-46 proximal
Cma05g00393 Cma-Chr5:1725330 Cma05g00395 Cma-Chr5:1730567 7.07E-08 proximal
Cma05g00392 Cma-Chr5:1721330 Cma05g00393 Cma-Chr5:1725330 2.55E-41 tandem
Cma05g00393 Cma-Chr5:1725330 Cma05g00394 Cma-Chr5:1727621 1.46E-46 tandem
Cma19g00356 Cma-Chr19:3848414 Cma05g00393 Cma-Chr5:1725330 1.05E-42 transposed
Cma19g00357 Cma-Chr19:3852773 Cma05g00393 Cma-Chr5:1725330 2.17E-15 transposed
Cma05g00393 Cma-Chr5:1725330 Cma08g00604 Cma-Chr8:3414117 5.04E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g454 . . . . . . . . Cmo05g00404 . . Cma05g00393 . . Sed08g1315 . . Bhi04g00983 Tan02g2709 Cmetu01g0189 . Hepe10g0266 . Lcy13g1768 . . . . . . . . . . . . . . Cme03g01633 . . . . . . . . . . . . . . . Cpe11g00336 . . . . . . . . Cla08g01321 Cam08g1782 Cec08g1360 Cco08g1487 Clacu08g1476 . Cre08g1265 Lsi08g01189 . Chy03g01135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000204 0 10 0 0 0 5 0 11 3 11 4 4 8 15 11 14 4 0 7 7 7 2 2 6 7 13 6 8 4 2 171
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00393 Cma_Chr05 FPKM 0.0 0.0 1.606065 2.738861 45.198948 41.783497 51.590992 0.0 0.0 0.0