Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00395 ATGATGGAACAATTACCTCTGGTTAATGAAGAATGTAGCATCTTTCGAGTTCATAAACTATTACGCAAGATGAATAATATAGCCTATATCCCTCAAGTCATTTCCATAGATCCATTTCATCATCATAGTCAAAAGGATTTGATAGCTACCGAACAATATAAGCTTCGATATTGTATTAATTTTCTAAATCGTTTGGATAACAAGATAGACTCATTAGAATTCCTTGTGAAAACTACTCAAAGTTGGATGAAAGAAGCTCGAAATTGCTATGAAGAACCCATAAACATGAGCGATGAAGATTTCATTCAAATGATGTTGGTGGATAGTTGTTGTGTAGTGGAGTTTTTGATATTGTATTATGTCGAACAACACCGAAATTCCTCACCTCAAACTCGAGACTATTTCAATCTTTACTTCTACCAAAGGGAACATGAGATATGTCTTGATTCGATTAAGCTAGAAAATCAAGTCCCTTTCTTTGTTCTTGAATGTTTGTTCCACCTTATACCACAAAGTGATGACCGCTTCGTCCATATCAACAAAACCTTACATAAGCACTGCAATAGACGATGGAACAAAGCAAAAGCTTCACTCAAACCCAACTATTTCAATACATCATGGGCTATATTCGCTGACCATTACAATTATCACAAAAATATTATCGACCCAAATTTGATTAAGTACAATTTTAAATTGTCATATTTTCATGTAATTCTTAGCCTACAAGTATCATTTTAA 738 33.47 MMEQLPLVNEECSIFRVHKLLRKMNNIAYIPQVISIDPFHHHSQKDLIATEQYKLRYCINFLNRLDNKIDSLEFLVKTTQSWMKEARNCYEEPINMSDEDFIQMMLVDSCCVVEFLILYYVEQHRNSSPQTRDYFNLYFYQREHEICLDSIKLENQVPFFVLECLFHLIPQSDDRFVHINKTLHKHCNRRWNKAKASLKPNYFNTSWAIFADHYNYHKNIIDPNLIKYNFKLSYFHVILSLQVSF 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1730567 1731703 + CmaCh05G003950.1 Cma05g00395 294513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00395 245 PANTHER BNAC04G53230D PROTEIN 173 210 - -
Cma05g00395 245 Pfam Plant protein of unknown function 14 170 IPR004158 -
Cma05g00395 245 PANTHER BNAC04G53230D PROTEIN 173 210 - -
Cma05g00395 245 PANTHER BNAC04G53230D PROTEIN 2 174 - -
Cma05g00395 245 PANTHER BNAC04G53230D PROTEIN 2 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00395 - - - cpep:111805984 214.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00395 Cma-Chr5:1730567 Cma19g00341 Cma-Chr19:3592053 9.69E-08 dispersed
Cma05g00393 Cma-Chr5:1725330 Cma05g00395 Cma-Chr5:1730567 7.07E-08 proximal
Cma05g00395 Cma-Chr5:1730567 Cma05g00398 Cma-Chr5:1736707 5.08E-34 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g453 . . . . . . . . Cmo05g00407 . . Cma05g00395 . . . . . Bhi04g00984 . . . . . Lcy13g1767 . . . . . . . . . . . . . . Cme03g01635 . . . . . . . . . . . . . . . Cpe11g00338 . . . . . . . . Cla08g01318 Cam08g1779 Cec08g1358 Cco08g1481 Clacu08g1474 . Cre08g1262 Lsi08g01185 . Chy03g01137 .
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00395 Cma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0