Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00404 ATGCAGAACGCCGCCGTCATCTTCTTGTCGGTGCTTCTCTCCGCCGCCTTCCATCCCGCTCTCAGCCTCGTCGACGGGTATTTGCCAAATGGGGATTTCGAGAGAGGTCCAAAGGCGTCGGACATGAACGGGACGGTGGTGAAAGGGCCATATGCAATACCGGAATGGGAGATTTCAGGTTTCGTGGAGTACATAAAGTCAGGGCAGAAACAAGGCGACATGTTGCTGGTAGTGCCGGAGGGGGCGTTCGCCGTCCGGCTAGGGAACGAGGCGTCGATCAAGCAGAAGGTCAAAGTAGTGAAAGGGCTTTACTATTCCATCACGTTCAGCGCCGCTCGAACCTGCGCTCAAGAGGAGCGCCTCAACATCTCTGTTGCGCCCGACTGGGGTGTCCTGCCGATGCAAACTCTGTACAACAGCAATGGCTGGGACTTGTACGCTTGGGCCTTCCAAGCCACCTCCGACGAGGTTGCCATTCTCATCCATAACCCCGGCGAGGAGGAAGACCCCGCCTGTGGCCCTCTCATCGACGCCATTGCCATTAAAACCCTCTACCCTCCCAAGGCCTCCAACGATAATCTGGTGAAGAATGGGGATTTCGAAGTCGGCCCATACGTGTTCCCCAACGCGTCGTCAGGCGTTTTGGTCCCACCGAACATCGAAGACGACCACTCTCCGATCCCCGGCTGGATGGTTGAATCTCTCAAGGCTGTCAAATACATCGATTCCGACCACTTCTCCGTCCCAAGCGGGAAGCGCGCCGTCGAGCTCGTTGCCGGAAAAGAAAGCGCGATAGCTCAGATCGTCCGTACGATCCCTGGAAAAACCTATATCCTGTCGTTCGTCGTCGGCGATGCGAGTAACTCGTGTGAAGGATCTATGGTGGTTGAAGCGTTCGCCGGAAAGAATACACTGAAAGTGCCGTACCAGTCGAAAGGAAACGGCGGATCTAAACCAGCGGCGCTGAAATTCCAGGCGGAGTCGACGAGGACGCGGATTATGTTCCTGAGCACATTTTACACCATGCGAAGCGATGATTTCTCGTCGCTGTGCGGGCCGGTGCTCGATAAGGCGCTGCCAAATCAGGCCACCGTGGATTATCCTAGCTTCAAGCTTGTAATTGTTGGCGATGGTGGAACAGGGAAGACAACCTTTGTCAAACGTCATCTTACTGGAGAGTTCGAGAAGAAATATGAACCGACAATCGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTACTGCTGGGATACCGCTGGTCAGGAGAAGTTTGGTGGACTTCGAGATGGTTACTATATTCATGGGCAGTGTGCCATCATCATGTTTGATGTCACTGCTCGTTTAACGTACAAAAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAGAACATACCGATCGTATTGTGTGGAAACAAGGTCGATGTGAAAAATAGACAGGTTAAAGCAAAGCAGGTGACCTTCCACAGGAAGAAAAATCTCCAGTATTACGAAATCTCTGCAAAGAGTAATTACAACTTCGAGAAGCCCTTCTTGTACCTTGCCAGAAAGCTTGCTGGGCACGAAGCAGAGTTAGCTCAAGCTGCTGCACAACCTCTTCCTGATGAAGACGATGATGCTTTTGAGTAA 1656 51.99 MQNAAVIFLSVLLSAAFHPALSLVDGYLPNGDFERGPKASDMNGTVVKGPYAIPEWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASIKQKVKVVKGLYYSITFSAARTCAQEERLNISVAPDWGVLPMQTLYNSNGWDLYAWAFQATSDEVAILIHNPGEEEDPACGPLIDAIAIKTLYPPKASNDNLVKNGDFEVGPYVFPNASSGVLVPPNIEDDHSPIPGWMVESLKAVKYIDSDHFSVPSGKRAVELVAGKESAIAQIVRTIPGKTYILSFVVGDASNSCEGSMVVEAFAGKNTLKVPYQSKGNGGSKPAALKFQAESTRTRIMFLSTFYTMRSDDFSSLCGPVLDKALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGHEAELAQAAAQPLPDEDDDAFE 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1766806 1774318 - CmaCh05G004040.1 Cma05g00404 294522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00404 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 531 IPR027417 -
Cma05g00404 551 CDD Ran 370 529 - -
Cma05g00404 551 ProSiteProfiles small GTPase Ran family profile. 363 527 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma05g00404 551 SUPERFAMILY Galactose-binding domain-like 26 182 IPR008979 -
Cma05g00404 551 PANTHER PLANT/F18G18-200 PROTEIN 7 357 - -
Cma05g00404 551 Pfam Ras family 371 527 IPR001806 GO:0003924|GO:0005525
Cma05g00404 551 SMART rho_sub_3 372 526 IPR001806 GO:0003924|GO:0005525
Cma05g00404 551 Gene3D - 188 348 - -
Cma05g00404 551 ProSiteProfiles small GTPase Rab1 family profile. 364 551 - -
Cma05g00404 551 SMART rab_sub_5 370 530 - -
Cma05g00404 551 ProSiteProfiles small GTPase Ras family profile. 361 551 IPR001806 GO:0003924|GO:0005525
Cma05g00404 551 SMART ras_sub_4 367 530 - -
Cma05g00404 551 TIGRFAM small_GTP: small GTP-binding protein domain 370 520 IPR005225 GO:0005525
Cma05g00404 551 PANTHER OS02G0527500 PROTEIN-RELATED 7 357 - -
Cma05g00404 551 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 486 504 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma05g00404 551 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 430 448 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma05g00404 551 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 383 397 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma05g00404 551 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 450 471 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma05g00404 551 Pfam Protein of unknown function (DUF642) 193 357 IPR006946 -
Cma05g00404 551 Pfam Protein of unknown function (DUF642) 26 182 IPR006946 -
Cma05g00404 551 Gene3D - 360 549 IPR027417 -
Cma05g00404 551 SMART ran_sub_2 375 550 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00404 - - - csv:101219952 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00066 Cma-Chr3:625804 Cma05g00404 Cma-Chr5:1766806 1.23E-124 dispersed
Cma03g01394 Cma-Chr3:8797517 Cma05g00404 Cma-Chr5:1766806 2.39E-115 dispersed
Cma05g00404 Cma-Chr5:1766806 Cma14g00993 Cma-Chr14:5209463 8.91E-141 dispersed
Cma11g01503 Cma-Chr11:9861268 Cma05g00404 Cma-Chr5:1766806 8.50E-39 dispersed
Cma12g00321 Cma-Chr12:1646758 Cma05g00404 Cma-Chr5:1766806 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g440 Blo01g01374 Blo12g01084 Bda01g00730 Bda03g00063 . . Bma04g00061 . Cmo05g00415 . . Cma05g00404 . Car12g00303 . Cpe07g00282 . . . . . . . . . . . . . . . . . Cone17ag1036 . . . . . . . . . . Bpe04g00049 . . . . . . . . Car05g00338 Cpe11g00344 . . . . . . . . Cla08g01310 Cam08g1770 Cec08g1351 Cco08g1472 Clacu08g1466 . Cre08g1253 Lsi08g01174 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004712 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 5 0 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00404 Cma_Chr05 FPKM 75.350372 82.600395 152.647781 143.326935 99.787537 100.727226 92.597954 64.804008 62.819031 62.791706