Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00405 ATGGGGGCTCCATTCGAGGGAATAGCAAATGATTTCAAGGGGAGGATAGCATGCTACAAACAGGATTGGGTTTGTGCACTATGTTCAGGCGTCAGGATTTTAGCTCCTACTATGTACATTTTCTTCGCCTCTGCTCTTCCTGTTATCGCCTTTGGAGAGCAACTAAGTAGGGATACAGGTGGAAGTTTGAGCACAGTGGAAGCATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATATTTGGGGGGCAGCCTTTGCTGATTTTAGGGGTGGCAGAACCAACAGTTATAATGTACATTTACCTATACAATTTCTGCAAAAGCAGGCCGGAGTTAGGGGGAAAACTCTTTTTAGCCTGGGCTGGATGGGTGTGCATCTGGACAGGATTCTTCCTGATTCTCCTTGCAATCTTCAATGCTTGCGCTGTCATCACCAAATTTACAAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCAATATTCCCAAGTCAGAAAATCCAGAGGAAGAGAAGTACCAATTTCAATGGTTGTATACAAATGGGTTGCTTGCTATCATTTTTTCTGTGGGTTTACTCTTCACAGCCTTGAAAAGCAGACATGCTAGATCATGGAAATATGGCACTGGCTGGTTTCGGAGTTTCATTGCGGACTATGGGGTTCCACTTATGGTCGTGTGTTGGACAGCATTGTCTTATGGAGTTCCGAGCAAAGTTCCAGATGGAGTTCCAAGGAGACTCTTTTGTCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGACTGTAGTGAAGGACATGGGGAAGGTTCCGCCGACTTACATCTTTGCTGCTTGTCTGCCAGCCGTGATGATAGCAGGTCTATACTTTTTTGACCATAGTGTTGCATCACAATTGGCTCAACAGAAAGAGTTTAATCTTCAAAAGCCACCTGCATATCATTATGATGTCCTCTTGCTTGGGCTTATGACTTTGATTTGTGGATTGCTTGGATTACCTCCTTCTAATGGTGTTCTCCCACAGTCCCCAATGCACACCAAGAGTCTGGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTTAAGAGTGCAAAAGAATGTATCAAACAAAAAGCTAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACACATCTCCAACTCCTAAAGAGCTAGAAACCTTGACGAAGGCAGTGATGAATGCTGATGATGGTAATCAGGACGGAAAATTCGATGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTACTGCAGTCTTTCCTTGTTGCCTTGACATTACTTGCTATCCCTATAATGAAAATGATACCCACGTCTGTTCTGTGGGGATACTTTGCTTATATGGCCATTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTATTGCTCTTCATTACACCTGGTCGGCGTTTCAAGGTCTTGGAGGGGTCTCATTTATCCATCGTTGAATCTGTGCCATTCAAGATCATCGCTTCATTTACCCTCCTTCAGTTTGCATATTTCTTGCTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGAATCATGTTCCCACTTCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTCGATGCTTCAGAGTACGAGGAGATTGCCGGTGCTCGACGTCGTGCCAAGAATCTCAACGTTCTGGAAAAGGAACGACCTGATACAATTGTGGAAGAAAATAACGAAGAATACTATGATGCGGAGATATTAGATGAGATGACAACTCATAGAGGAGAGTTGAAGCTTAGGACTGTAAGTCACAACGAAGAACGGTTCCTGCAGATTCATCCTGAAGATTCCCTTCAACGACAATGA 1986 43.81 MGAPFEGIANDFKGRIACYKQDWVCALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGSLSTVEALASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYNFCKSRPELGGKLFLAWAGWVCIWTGFFLILLAIFNACAVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFNIPKSENPEEEKYQFQWLYTNGLLAIIFSVGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVCWTALSYGVPSKVPDGVPRRLFCPLPWEPASLYHWTVVKDMGKVPPTYIFAACLPAVMIAGLYFFDHSVASQLAQQKEFNLQKPPAYHYDVLLLGLMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDTSPTPKELETLTKAVMNADDGNQDGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVALTLLAIPIMKMIPTSVLWGYFAYMAIDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSIVESVPFKIIASFTLLQFAYFLLCFGVTWIPVAGIMFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGARRRAKNLNVLEKERPDTIVEENNEEYYDAEILDEMTTHRGELKLRTVSHNEERFLQIHPEDSLQRQ 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1781739 1785111 - CmaCh05G004050.1 Cma05g00405 294523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00405 661 PANTHER ANION EXCHANGE PROTEIN 3 657 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cma05g00405 661 Pfam HCO3- transporter family 195 371 IPR011531 GO:0006820|GO:0016021
Cma05g00405 661 Pfam HCO3- transporter family 4 178 IPR011531 GO:0006820|GO:0016021
Cma05g00405 661 Pfam HCO3- transporter family 445 507 IPR011531 GO:0006820|GO:0016021
Cma05g00405 661 Gene3D Helical hairpin bin 15 57 - -
Cma05g00405 661 PANTHER BORON TRANSPORTER 6-RELATED 3 657 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00405 Cma12g00320 CCT
Cma05g00405 Cma12g00320 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00405 Cma-Chr5:1781739 Cma14g00951 Cma-Chr14:4928445 0 dispersed
Cma14g01328 Cma-Chr14:10407572 Cma05g00405 Cma-Chr5:1781739 0 transposed
Cma12g00320 Cma-Chr12:1636781 Cma05g00405 Cma-Chr5:1781739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00405 K24194 - csv:101220188 1192.18