Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00406 ATGAGCCTGATTGTCCCACTGCCATCAAACCTCCTCCCAGATCCGGCGAACCCGGAATGGATGAGCAAAGGCGACAACGCCTGGCAGATGACTGCGGCGACATTGGTGGGCCTGCAAAGCGTGCCAGGTCTGATAATCCTATACGGTGGGGCGGTGAAGAAGAAATGGGCCATAAACTCAGCCTTCATGGCGCTGTACGCCTTTGCGTGCGTGCTGGTGTGTTGGGTGGGGTGGGGGTACCGGCTGTCGTTTGGGGATAGGTTGTTGCCGTTTTGGGGGAAGCTGAATGTGGCGTTGGACCAGCAGTTTCTGCTGGAGCAGGCGTTTAGTGGGAAGCTGCCATCGGCGACAATGGTGTTCTTTCAGTTCGTATTTGCGGCGATTACTCTGGTTTTGATTGCTGGGGCATTGCTTGGGCGGATGAACTTCTACGCTTGGATGCTGTTCGTGCCGCTTTGGCTTACGTTTTCGTATACGTTTGTGGCGTTTAGTATTTGGAGTCCTAATGGTTTTTTCTTTAAGATGGGACTCATTGATTACTCCGGTGGCTACGTCATTCATTTGTCGTCTGGCGTTGCCGGCTTCACCGCTGCATATTGGGTTGGGCCACGGCTGTCCAAAGACAGAGAAAGCTTCCCTCCAAACAACATTCTTCTAATGTTGGCCGGAGCAGGGCTGCTGTGGATGGGCTGGACCGGGTTCAACGGTGGAGACCCGTACGCCGCCAACATCGACGCCTCACTGGCAGTTCTGAACACCCACGTGTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATAGTCTTCTTCCGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCGGCGATTATAATGGGCTTGCTATCAGGATCCATCCCATGGTTCACAATGATGGTGGTTCACAAGAAATCCGCCATCCTCCAAAAGGTGGACGACACAATGGCCGTGTTCCACACCCACGCCATCGCCGGCAGCCTAGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTACTACGGCGCCTACAACAAGTACGTTGGCCTTTTCTACGGCTTCAACTCAAAGCAAGTCAAGCTCGGCTTCCGCCAACTCGGCGTCCAGCTCCTTGGTATCCTCTTCGTCACCCTCATAAACATTATCGTCACTAGCCTTATATGCGTCCTCCTCCAATACATTGTGCCGCTCCGAATGTCCGAGGAGGACATGGCCATTGGCGACGAGGCCGCCCACGGTGAAGAGGCTTATGCCATTTGGGGACAGGGTGAGAAGATGGACACTTCTAAGTACGATATTGAAGTCCCGGCTGTGGCCAAGCATAGACATATAGGCCAGGTTGAAATGGCATGA 1425 54.88 MSLIVPLPSNLLPDPANPEWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDRLLPFWGKLNVALDQQFLLEQAFSGKLPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGLLSGSIPWFTMMVVHKKSAILQKVDDTMAVFHTHAIAGSLGGILSGIFAEPRLNFVYYGAYNKYVGLFYGFNSKQVKLGFRQLGVQLLGILFVTLINIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDTSKYDIEVPAVAKHRHIGQVEMA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1788453 1790836 - CmaCh05G004060.1 Cma05g00406 294524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00406 474 TIGRFAM amt: ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma05g00406 474 SUPERFAMILY Ammonium transporter 20 423 - -
Cma05g00406 474 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005887
Cma05g00406 474 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005887
Cma05g00406 474 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005887
Cma05g00406 474 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma05g00406 474 PANTHER AMMONIUM TRANSPORTER MEP2 2 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma05g00406 474 PANTHER AMMONIUM TRANSPORTER 2 473 - -
Cma05g00406 474 Gene3D Ammonium transporter AmtB like domains 13 445 IPR029020 -
Cma05g00406 474 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00646 Cma-Chr3:5495475 Cma05g00406 Cma-Chr5:1788453 0 dispersed
Cma05g00406 Cma-Chr5:1788453 Cma14g00047 Cma-Chr14:204352 3.35E-177 dispersed
Cma05g00406 Cma-Chr5:1788453 Cma06g00216 Cma-Chr6:1102589 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00406 K03320 - csv:101210590 877.856