Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00409 ATGTCGAGCGCCGTCTTGGTCGCACGCTCTAGCTCCTGGTCTCGTGCTCTCATCAACATCTCTCCGTACACCTTCTCTGCCGTCGGCATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGCGTTATTTTCTGTGAAGCTGTTGCTATATACGGTGTTATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAAATCTATGCCCCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCTAACCTTGTCTGCGGGCTTTGTGTTGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTCGTGAAGATTCTTGTAATCGAGATCTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATCGTCGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 49.0 MSSAVLVARSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1802161 1803900 - CmaCh05G004090.1 Cma05g00409 294527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00409 182 Gene3D - 23 177 IPR035921 -
Cma05g00409 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cma05g00409 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cma05g00409 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cma05g00409 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cma05g00409 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00409 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00409 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00409 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00409 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cma05g00409 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cma05g00409 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma05g00409 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00409 Cma-Chr5:1802161 Cma05g00288 Cma-Chr5:1236640 4.11E-25 dispersed
Cma01g01490 Cma-Chr1:10471836 Cma05g00409 Cma-Chr5:1802161 1.02E-109 wgd
Cma12g00314 Cma-Chr12:1614332 Cma05g00409 Cma-Chr5:1802161 3.94E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00409 K03661 - csv:101221052 328.946