Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00410 ATGTGGCCGTCGTTTCTCAGCCTCGTATCCTTGTACGGCGGCTATCTCCGCCGCTGCTTCACCGCCGCGGGCCTTACGCAGCAAGCCATAGACATCGACGCCGAAACGACTCTTTCCTTTTGGGGCCCTAAGCCCAGTAAATCCAACGCGAAACCCTCCCTCCTCCTCCTCCACGGCTTCGGCCCGATGGCGATTTGGCAATGGCGTCCACAAGTCCAATTCCTCGCCGATGATTTCGACGTCTACGTTCCCGACCTCGTCTTCTTCGGCGGTTCGATGACCAAATCAGCGGAGAGGACTGAGGTTTTTCAGGCGATCTCGATCGGAAAGCTTCTGGAGAAGATCGGAGTGAAGAAATACTCGGTGATGGGAACGAGCTACGGCGGATTTGTGGCGTATCACATGGCGAGGATTTGGCCGGAGAGGATCGAGAAAGTTGTAATCGCGAGCTCCGGCGTTAATATGAGACGGAAAGATAACGACGCGATGTTGAAAAGAGCTAACGTGGAGAATATCGATGAATTCTTGCTGCCGATGACGGCGGAACAGTTACGGACGTTAATGAAGCTTGCTGTATTCAAGGGAGTGGGCAGACGGATGCCGGACTTCTTCTTGAACGATTTCATCCATAAATTGTACATGGAAAAGAGGAAGGAAAAGATCGAACTCCTCAAGTCGCTCACTCTTGGGCGGGAAGATACCATCGACCTCTCTCCACTCTTTCAGGAGGTATTGATAATATGGGGAGATCATGACCAGTTATTTCCCTTGGAAATGGCTAAGGAGCTGAAAGAGATTCTCGGGGAAAAGACAAGGCTGGAGGTGATGAAGGAGACCTCGCACGTGCCGCATATTGAGTCCCCTGCAGAATTCAACCGTGTCGTTAAGCGTTTCTTGTGTGGGATCTGA 909 51.93 MWPSFLSLVSLYGGYLRRCFTAAGLTQQAIDIDAETTLSFWGPKPSKSNAKPSLLLLHGFGPMAIWQWRPQVQFLADDFDVYVPDLVFFGGSMTKSAERTEVFQAISIGKLLEKIGVKKYSVMGTSYGGFVAYHMARIWPERIEKVVIASSGVNMRRKDNDAMLKRANVENIDEFLLPMTAEQLRTLMKLAVFKGVGRRMPDFFLNDFIHKLYMEKRKEKIELLKSLTLGREDTIDLSPLFQEVLIIWGDHDQLFPLEMAKELKEILGEKTRLEVMKETSHVPHIESPAEFNRVVKRFLCGI 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1804922 1806764 + CmaCh05G004100.1 Cma05g00410 294528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00410 302 Pfam Alpha/beta hydrolase family 54 293 IPR000073 -
Cma05g00410 302 PANTHER SI:DKEY-122A22.2 5 300 - -
Cma05g00410 302 Gene3D alpha/beta hydrolase 16 300 IPR029058 -
Cma05g00410 302 SUPERFAMILY alpha/beta-Hydrolases 40 299 IPR029058 -
Cma05g00410 302 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 300 - -
Cma05g00410 302 PRINTS Alpha/beta hydrolase fold signature 78 93 IPR000073 -
Cma05g00410 302 PRINTS Alpha/beta hydrolase fold signature 122 135 IPR000073 -
Cma05g00410 302 PRINTS Alpha/beta hydrolase fold signature 136 149 IPR000073 -
Cma05g00410 302 PRINTS Alpha/beta hydrolase fold signature 244 258 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00410 - - - cmos:111462697 593.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00396 Cma-Chr2:2006494 Cma05g00410 Cma-Chr5:1804922 1.95E-30 dispersed
Cma05g00410 Cma-Chr5:1804922 Cma05g00500 Cma-Chr5:2371591 2.72E-68 dispersed
Cma05g00410 Cma-Chr5:1804922 Cma16g00706 Cma-Chr16:3677599 1.48E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g172 . . . . Bpe02g01564 . . . Cmo05g00422 . . Cma05g00410 . . Sed11g0859 . . Bhi04g01523 Tan02g1575 Cmetu03g2273 . Hepe08g1441 . Lcy13g2228 . . . . . . . . . . Cone20ag0294 Lsi04g02234 . . . Blo17g00271 Blo18g00258 Bda01g01351 . Bpe14g00283 . Bma01g00907 . . . . . . . Car05g00345 Cpe11g00350 . . . . . . . . Cla08g00981 Cam08g1430 Cec08g1008 Cco08g1131 Clacu08g1135 . Cre08g0919 . . Chy03g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009871 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00410 Cma_Chr05 FPKM 9.874766 11.899555 2.490788 1.701763 5.61475 6.242753 5.698971 0.663486 0.735247 0.523125