Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00412 | ATGAGCCTACGCAAGGGCTCTAAGGTTTGGGTGGAAGACAGAGATTCTGCTTGGGTGGCTGGTGAAGTCATCGAGTTCGGCGGTAAACAAGCTCGAGTTGCAACTATTACTGGAAAGAAGGTCTTGGCTCTTCCTGAGAAGCTTTTTCCGAGGGATGCGGATGAGGACGAGCATGGAGGGGTGGATGATATGACGAAGTTGACCTATTTGAATGAGCCTGGGGTGCTTTATAATCTTCGAAGAAGATATTCTCTCAATGACATATATACATACACAGGTAGCATTTTGATTGCTGTTAATCCATTCACAAAGCTTCCCCATCTATACAATGTTCACATGATGGAGCAGTACAAGGGAGCACCTTTTGGGGAACTGAGCCCCCATGTTTTTGCAGTTGCTGATGCATCCTATAGAGCAATGATTAGTGAGGGTCGAAGCCAGTCAATATTGGTCAGTGGAGAGAGTGGTGCAGGGAAAACCGAGACAACAAAATTGATTATGCAGTATCTTACATTTGTTGGAGGTCGAGCGTCTGGCAATGACAGAACTGTTGAGCAACAAGTTCTTGAATCAAATCCTTTGCTGGAAGCATTTGGTAATGCAAGGACAGTTAGAAACGATAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATACGAATGGTAGAATATCGGGTGCTGCAATTAGAACTTATCTTCTAGAACGTTCTCGTGTTGTGCAAATTACGAACCCTGAGAGGAACTATCATTGTTTTTATCAGCTATGTGCATCTGGCAGGGATGCAGAGAAGTACAAGTTAGACCACCCAAGTCATTTTCGATACTTAAATCAAAGCAAGACCTATGAATTAGATGGAGTGAGCAATGCTGAGGAGTATATTAGGACAAGGAGGGCAATGGATATAGTTGGTATCAGCCATGAGGATCAGGAAGCTATCTTTCGTACCTTGGCTGCAATTTTGCATTTGGGGAACATTGAGTTTTTGCCTGGAAAAGAACACGACTCTTCCGTCTTGAAGGATGAAAAGTCTACCTTTCATTTAGGGGTGGCTTCTAATCTTCTCATGTGTAATTCCAACCTCTTGGTCTCAGCCCTTTGTACTCGTTCAATTCATACTCATGAAGGAATTATTGTCAAAGCGCTAGATTGTGAAGGTGCCGTTGCTAGTCGAGATGCATTGGCAAAGACTGTTTACGCTCGTCTGTTTGATTGGCTTGTTGATAAGATCAACCGATCTGTCGGACAAGATCCAAATTCTCAATTTCAAATTGGGTTATTGGACATTTATGGTTTTGAATGCTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAATTTTGCGAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTGTTTAAGATGGAGCAGGAAGAGTATAGCAAAGAGGAAATAAATTGGAGCTACATTGAATTCATCGACAATCAGGATGTGTTGGATTTGATTGAGAAGAAACCTATTGGGATCATTGGTTTGCTGGATGAGGCTTGTCTGTTTCCAAGATCAACTCATGAAACATTCTCAACCAAATTATTTCAGAACTTTCATACTCACCCAAGGTTGGAAAGAACAAAATTTTCAGAAACAGATTTCACTCTTTCCCATTATGCTGGAAAGGTCACTTATCATACAGATACCTTTTTAGATAAAAATCGTGATTATGTTGTGGTAGAGCATTGCAGTCTATTGGCTTCTTCTAGATGCACTTTTGTTGCTGGCCTTTTCTCTTCCGTTCCAGAGGAATCTTCAAGATCATCGTATAAATTTTCTTCTGTAGCCTCAAGATTTAAGCAACAACTTCAAGCACTTATGGAGACACTGAATTCTACTGAGCCCCATTATGTACGCTGTGTGAAGCCAAATTCTCTTAATAAGCCCCAGAAGTTTGAGAACCCAAGCATTCTGCATCAATTACGTTGTGGGGGTGTTTTGGAAGCTGTTCGAATAAGTCTTGCAGGTTATCCCTCCAGAAGAACTTATACAGAGTTTATTGACCGTTTTGGTTTGTTGGCTCCTGATTTATTGGATGGAAGCTACGATGAAAGGTTGATAACAGAAAAAATTCTACAAAAGTTGAAGCTAAAAAATTTCCAGTTAGGTAGGACCAAAATATTTCTTAGGGCTGGTCAAATTGGCATTCTGGATGCTCGAAGAGCTGAAGTATTGGATAATGCTGCGAAGTGTATACAACGCCGGTTACAAACATACCATGCGCGCAAGGATTTTTTATTAATGCGTTCTACTGCAATTTCACTTCAAGCATATTGCAGAGGATGCCTTGCCCGAAAGTTTTATGTTGCGAAACGACAAAGTGCTGCTGCCACTACGATACAGAAATATATTCGCAGGTGGTTCTCCAGGAATACTTATTTGGAGCTCTATAAAGCTACTCTAACCGTACAGTCCAGTATTCGTGGTTTTACAACTCGCAAAAGGTTTTTGCATGATAGAAGAAATAAAGCTGCGATATTAATTCAGGCTCAATGGAGGACATTCAAGGTTCGTACTGTTTTCCATCGCCACCAAGCTTCTATTATTTCAATACAATGTCGATGGAGGCAAAAGCTTGCAAAAAGGGAACTTCGAAGACTTAAACAGGAAGCTAATGAAGCTGGAGCATTGCGTTTAGCTAAGAACAAACTTGAGAAGCAGTTGGAAGATCTTACGTGGCGGTTGCATTTGGAGAAAAGACTGCGGGCTTCTAATGAAGAGGCTAAGTCAAACGAAATATTAAAATTGCAAAAGATGCTTGAATCTTTGAGTCTGGAGTTAGATGCAGCTAAATTTGCTGCAATCAATGAGTGCAACAAAAATGCTGTTCTGCAAAACCAAATGGATCTGTTGGCAAAGGAGAAGTATGCATTTGAAAGAGAAATTGTAGCAGTAGTTGAACTAAAGAAAGAAAATGCTTTCCTCAAGAGTGCTTTGGATGCCCTGGAGAAAAAGAACTCAGCTCTGGAGGTTAAGCTTGTTGAGGCACAAAAGGATGGAAGCCACACTGTTGAAAAGTTGCAGGAGGTTGAACAGAAATGCACTAAGCTGCAACATAATGTGAAAAGTCTCGAAGAAAAACTCTCAGTTTTAAAGGATGAGAATCACGTATTGCGGCAGAAAGCCTTAAGTGCAACTCCGAGGAGCACCCGACCCAATTTTGTAAGGGCATTATCTGAGAAATCTTCTGGTGCGCTTATCCCTAATGCTGACAGGAAAACTCTCTTTGAGTCACCAACACCTACAAAACTGGTTGCACCATTTTCACAAGGCCTTTCCGAATCACGACGAACAAAATTAACTGTAGAGAGACACCAGGAAAACTATGAACTCCTTTCTAGGTGTATTAAAGAAAATTTGGGGTTTAAAGGTGGTAAGCCACTGGCTGCTTGCATCATCTACAAATGCCTTCTTAACTGGCATGCCTTCGAATCAGAACGAACAGTTATCTTTGACTACATAATTGAACGAATAAATGATGCCCTCAAGGTTGGGGATGAGAACATTGCCTTGTCATATTGGTTGTCAAACGCTTCTGCATTACTATGCCTCCTGCAAAGAAATATAAAGTCAAATGGATTTTTGAGCGCAGCTACTCAGCGTTCTGCAGGTTCTACTGGCTTAGCTAGCAGGATTTCTCAGGGACTAAAATCACCCTTCAAATATATTACTTTTGAAGATGGGATTTCTCATCTTGAAGCAAGATATCCGGCTATATTGTTTAAACAGCAATTAACTGCTTGTGTGGAGAAGATATTTGGCATGATTCGTGATAATTTGAAGAAAGAATTGTCTCCTTTGTTGAGCTCATGTATTCAGGCGCCCAAAGCTGCACGAGTACATGCTGGGAAGTCCTCTAAATCGCCTGGTGTTCCTCAGCCATCTACAAGTAGTCCATGGGACAACATAATAAAGTTTTTGGATTCTTTGATGAGTCAATTACGTGAGAATCATGTGCCGTCTTTCTTCATTCGTAAATTGATCACTCAGGTGTTCTCGTTCATCAATATTTCTCTTTTTAACAGCCTTCTTCTACGACGTGAATGTTGCACGTTTTCAAATGGGGAGTATGTGAAATCTGGTTTAGCTGAACTAGAGAAGTGGATTGGCAATGCAACAGATGAGTATTCAGGGACCTCTTGGCATGAACTAAACTATATAAGGCAATCTGTCGGGTTTCTGGTAATACATCAGAAGAGAAAGAAATCACTTGAAGAGATAAGACAGGATCTTTGCCCTGCATTGACTGTGAGACAAATTTACCGCATTAGTACTATGTATTGGGATGACAAATACGGCACTCAGAGTGTGTCAAACGAGGTGGTTGCTCAAATGAGGGAAATTCTGAACGAGGACAATCAGAACTTAACCTCAAATTCATTTTTGTTGGATGATGATCTAAGCATCCCATTCTCTACTGAAGACATTGATATGGCTCTTCCCCCTATCGAACCTTCAGACATCGAACTTCCCAGTTTCCTGTCCGAATACACCTGTGCACAATTCCTCACCGAGCAGCAAAAGTAG | 4548 | 40.85 | MSLRKGSKVWVEDRDSAWVAGEVIEFGGKQARVATITGKKVLALPEKLFPRDADEDEHGGVDDMTKLTYLNEPGVLYNLRRRYSLNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRASGNDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAEKYKLDHPSHFRYLNQSKTYELDGVSNAEEYIRTRRAMDIVGISHEDQEAIFRTLAAILHLGNIEFLPGKEHDSSVLKDEKSTFHLGVASNLLMCNSNLLVSALCTRSIHTHEGIIVKALDCEGAVASRDALAKTVYARLFDWLVDKINRSVGQDPNSQFQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIGLLDEACLFPRSTHETFSTKLFQNFHTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCSLLASSRCTFVAGLFSSVPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNKPQKFENPSILHQLRCGGVLEAVRISLAGYPSRRTYTEFIDRFGLLAPDLLDGSYDERLITEKILQKLKLKNFQLGRTKIFLRAGQIGILDARRAEVLDNAAKCIQRRLQTYHARKDFLLMRSTAISLQAYCRGCLARKFYVAKRQSAAATTIQKYIRRWFSRNTYLELYKATLTVQSSIRGFTTRKRFLHDRRNKAAILIQAQWRTFKVRTVFHRHQASIISIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRASNEEAKSNEILKLQKMLESLSLELDAAKFAAINECNKNAVLQNQMDLLAKEKYAFEREIVAVVELKKENAFLKSALDALEKKNSALEVKLVEAQKDGSHTVEKLQEVEQKCTKLQHNVKSLEEKLSVLKDENHVLRQKALSATPRSTRPNFVRALSEKSSGALIPNADRKTLFESPTPTKLVAPFSQGLSESRRTKLTVERHQENYELLSRCIKENLGFKGGKPLAACIIYKCLLNWHAFESERTVIFDYIIERINDALKVGDENIALSYWLSNASALLCLLQRNIKSNGFLSAATQRSAGSTGLASRISQGLKSPFKYITFEDGISHLEARYPAILFKQQLTACVEKIFGMIRDNLKKELSPLLSSCIQAPKAARVHAGKSSKSPGVPQPSTSSPWDNIIKFLDSLMSQLRENHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATDEYSGTSWHELNYIRQSVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMREILNEDNQNLTSNSFLLDDDLSIPFSTEDIDMALPPIEPSDIELPSFLSEYTCAQFLTEQQK | 1515 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1811143 | 1836052 | - | CmaCh05G004120.1 | Cma05g00412 | 294530 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00412 | 1515 | Gene3D | - | 781 | 828 | - | - | |
| Cma05g00412 | 1515 | Gene3D | - | 829 | 879 | - | - | |
| Cma05g00412 | 1515 | Gene3D | - | 731 | 780 | - | - | |
| Cma05g00412 | 1515 | ProSiteProfiles | Myosin motor domain profile. | 59 | 729 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | SMART | iq_5 | 754 | 776 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | SMART | iq_5 | 779 | 801 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | SMART | iq_5 | 731 | 753 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | SMART | iq_5 | 802 | 824 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | SMART | iq_5 | 827 | 849 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | SMART | iq_5 | 850 | 872 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 49 | 779 | IPR027417 | - | |
| Cma05g00412 | 1515 | Coils | Coil | 972 | 1006 | - | - | |
| Cma05g00412 | 1515 | PANTHER | MYOSIN | 3 | 1512 | - | - | |
| Cma05g00412 | 1515 | Gene3D | Kinesin motor domain | 62 | 659 | IPR036961 | - | |
| Cma05g00412 | 1515 | Pfam | Myosin head (motor domain) | 61 | 717 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | ProSiteProfiles | IQ motif profile. | 780 | 809 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | ProSiteProfiles | IQ motif profile. | 755 | 784 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | PRINTS | Myosin heavy chain signature | 89 | 108 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | PRINTS | Myosin heavy chain signature | 146 | 171 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | PRINTS | Myosin heavy chain signature | 193 | 220 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | PRINTS | Myosin heavy chain signature | 425 | 453 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | PRINTS | Myosin heavy chain signature | 478 | 506 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | Coils | Coil | 1014 | 1048 | - | - | |
| Cma05g00412 | 1515 | CDD | MyosinXI_CBD | 1110 | 1481 | IPR037975 | GO:0007015 | |
| Cma05g00412 | 1515 | ProSiteProfiles | IQ motif profile. | 851 | 880 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | Coils | Coil | 864 | 908 | - | - | |
| Cma05g00412 | 1515 | CDD | MYSc_Myo11 | 73 | 717 | IPR036018 | - | |
| Cma05g00412 | 1515 | ProSiteProfiles | IQ motif profile. | 803 | 832 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | Pfam | IQ calmodulin-binding motif | 782 | 800 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | Pfam | IQ calmodulin-binding motif | 830 | 848 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | Pfam | IQ calmodulin-binding motif | 805 | 823 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | Pfam | IQ calmodulin-binding motif | 759 | 773 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | SMART | DIL_2 | 1333 | 1440 | IPR002710 | - | |
| Cma05g00412 | 1515 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 784 | 878 | IPR027417 | - | |
| Cma05g00412 | 1515 | SMART | MYSc_2a | 53 | 730 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | Gene3D | - | 249 | 306 | - | - | |
| Cma05g00412 | 1515 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 4 | 53 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Cma05g00412 | 1515 | Pfam | DIL domain | 1334 | 1437 | IPR002710 | - | |
| Cma05g00412 | 1515 | PANTHER | PROTEIN OPAQUE1-LIKE | 3 | 1512 | - | - | |
| Cma05g00412 | 1515 | Gene3D | - | 435 | 620 | - | - | |
| Cma05g00412 | 1515 | ProSiteProfiles | Dilute domain profile. | 1159 | 1458 | IPR002710 | - | |
| Cma05g00412 | 1515 | ProSiteProfiles | IQ motif profile. | 828 | 857 | IPR000048 | GO:0005515 | |
| Cma05g00412 | 1515 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 308 | 598 | - | - | |
| Cma05g00412 | 1515 | Gene3D | - | 663 | 730 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00412 | Cma-Chr5:1811143 | Cma12g01141 | Cma-Chr12:8982701 | 0 | dispersed | |
| Cma05g00412 | Cma-Chr5:1811143 | Cma05g01225 | Cma-Chr5:9410210 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00412 | K10357 | - | csv:101210527 | 2818.11 |