Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00414 ATGGGTCCAGCAGTTCTGAGTTCCCACACCAATGGCTTCTCCAAATCAGTAGATCGAAACTTCGAAGAGAAAAGCAATTACATCAATGGAGATTCTTCTCATGAATCGGTAATCAATAATGTTAATGGCAACGATTGCTATTGGTTCGAGGAAATCATCGACGAAAATCTCAAATGGTCTTTTGCTCTGAATAGCGTTCTGCAGAAAGGAACCAGCGAGTTTCAGGATATCGCGTTATTAGATACCAAGTGTTTCGGAAAAGCATTGATGATCGACGGGAAGATGCAGAGCGCTGAAGCCGATGAATTCGTCTATCATGAATGCTTGATTCATCCCGCACTATTATGCCATTCCAACCCGAAAACGGTATTCATAATGGGAGGTGGGGAAGGTTCAGCGGCAAGAGAAGTCCTCAAACACAGATCAATAGAAAAAGTTGTCATGTGCGATATCGATCAAGATGTAGTGGATTTCTGCCGTAAATATTTGACTGTGAACCAGGAGACATTTTGTCACAAAAAGCTTCATCTTGTAATAAACGACGCCAAGGCGGAATTGGAAAAGAGAAAGGAGAAATATGATATAATTATAGGAGACCTAGCAGACCCTGTTAAAGATGGGCCTTGCTACAAGCTCTACACCAAATCCTTCTACCAGGAGATCGTCAAGCCAAAGCTCCACGACAATGGCATCTTCGTAACTCAGGCAGGACCTGCCGGGATTTTCACCCACAAAGAGGTTTTTACCTCCATATATAACACAATCAAACAGACATTCAACTATGTGATTGCTTACACGGCTTACATACCATCTTTTGCAGACACGTGGGGATGGGTTATGGCATCAGATCATCCTTTCTGTATAAAATCTGAGGATTTGGATAAGAAAATTGAAGATAGAATCGATGGGGAGTTGCTCTATTTAACTGGTCCTTCCATTGTGTCCTCCACCATTATCAACAAGATGGTTTCTTTAGCGTTGTTGAATGAAACTCATATCTACACTGAAACGACTGCAAAATTCATACATGGTCAAGGAGTTGGATTCAAGCAACAGAATGGCGGGAGTTGTCGTGACGCAATCTCCTCGAGGGGAAAGGATCGTCCGAATGTCCTATCGTCAATGGCGACACCAACCACTCCTTCGCGAATTAGTTCGGAGCAGTTCAAATCGTTCACTTCAATCCTTCCGCCTCTGCCGCTGAGATTCACCGCCGCCAAAACTAAGAATCAATGGCGAGTGAGGTGCGCATTGTCCTCAAACAATTGGCGGGAGAGCAGGCGACTGTTCTCCATCTCTCTTGTCTTCTCAAATTTGTTCCTGATTCCTCACCATGCCTCTGCCGGAAGCTTTCTGGACAAATACGTGAAGAAGAAAAAGCTGGATCCGCTTGAAGTTTATGTTCCAGCCGTCATATTGACGCAGTTACAAATCAAAGACGTCGGGAAAATTTTGGAAAGTAGTAAACCAGAATACGCGACATGCCGATCTCTCTTGCGTTCTGGAATTGCATCATCACTTCGAGTAAATATTCGAGCAGTTGCACAATATGCCTCGGAGGATGGAAATGGAAACATTGCGTTTGACAATGTTGATCAATGTCTCAGGGCCCTGGAAGAACTTGATTCTTCCCTTTTACGTGCCACAAGAAATGATCGTGGAACCTCAATTGAGTCGATGAAGACCAATATTGACACTGCCGTCCTTGCTCTAGACCGGCTCCTTCAAACTGTTCCTCCTGATGTCCTGGCTAAAGGGCAGGCTATTGCTGATGCTTATAATTCTCCTGAAGAGGAAGAAACCGAAATTGCAGACCCAGAACTGAAGCAGTTGGAATCTATTTTATGA 1848 43.94 MGPAVLSSHTNGFSKSVDRNFEEKSNYINGDSSHESVINNVNGNDCYWFEEIIDENLKWSFALNSVLQKGTSEFQDIALLDTKCFGKALMIDGKMQSAEADEFVYHECLIHPALLCHSNPKTVFIMGGGEGSAAREVLKHRSIEKVVMCDIDQDVVDFCRKYLTVNQETFCHKKLHLVINDAKAELEKRKEKYDIIIGDLADPVKDGPCYKLYTKSFYQEIVKPKLHDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQTFNYVIAYTAYIPSFADTWGWVMASDHPFCIKSEDLDKKIEDRIDGELLYLTGPSIVSSTIINKMVSLALLNETHIYTETTAKFIHGQGVGFKQQNGGSCRDAISSRGKDRPNVLSSMATPTTPSRISSEQFKSFTSILPPLPLRFTAAKTKNQWRVRCALSSNNWRESRRLFSISLVFSNLFLIPHHASAGSFLDKYVKKKKLDPLEVYVPAVILTQLQIKDVGKILESSKPEYATCRSLLRSGIASSLRVNIRAVAQYASEDGNGNIAFDNVDQCLRALEELDSSLLRATRNDRGTSIESMKTNIDTAVLALDRLLQTVPPDVLAKGQAIADAYNSPEEEETEIADPELKQLESIL 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1850006 1856847 + CmaCh05G004140.1 Cma05g00414 294532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00414 615 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 46 283 IPR030374 -
Cma05g00414 615 Pfam Spermine/spermidine synthase domain 102 282 - -
Cma05g00414 615 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 41 350 - -
Cma05g00414 615 MobiDBLite consensus disorder prediction 358 377 - -
Cma05g00414 615 Gene3D Spermidine synthase, tetramerisation domain 47 98 IPR037163 -
Cma05g00414 615 PANTHER BNAA02G04280D PROTEIN 41 350 - -
Cma05g00414 615 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 291 IPR029063 -
Cma05g00414 615 Hamap Polyamine aminopropyltransferase [speE]. 47 319 IPR001045 GO:0003824
Cma05g00414 615 Pfam Spermidine synthase tetramerisation domain 47 99 IPR035246 -
Cma05g00414 615 Gene3D Vaccinia Virus protein VP39 99 351 IPR029063 -
Cma05g00414 615 CDD AdoMet_MTases 127 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00414 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - csv:101210030 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00414 Cma-Chr5:1850006 Cma06g01416 Cma-Chr6:9119732 4.80E-155 dispersed
Cma05g00414 Cma-Chr5:1850006 Cma18g00807 Cma-Chr18:7069542 1.13E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g162 Blo01g01446 . . . . Bpe02g00508 . Bma01g02194 . . . Cma05g00414 . . . . . . . . . . . . . . . . . . . . . Cone17ag0945 Cone20ag0288 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00414 Cma_Chr05 FPKM 13.949789 16.36845 68.455696 70.795044 33.323273 33.327381 32.868206 4.833126 5.029776 4.535275