Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00416 ATGGACGGGGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTGATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGTATAAACTTTGCTAGAGACGGGATGCAAGAAAAGGATTGGCTATCCTTGGTTGCGGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAGTACGAAAGCTGTTCAATCGAAGGACGAGGATGAGGAAGGCTTGGAAGAGGAAGACGAAGAAGAACATGGAGAAACACTTTGCGGAGCTTGCGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCAGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGCGAATCCGACCCTGA 762 43.7 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1869933 1874974 + CmaCh05G004160.1 Cma05g00416 294534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00416 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Cma05g00416 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Cma05g00416 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cma05g00416 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cma05g00416 253 SMART PHD_3 199 247 IPR001965 -
Cma05g00416 253 MobiDBLite consensus disorder prediction 145 174 - -
Cma05g00416 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cma05g00416 253 Pfam PHD-finger 200 249 IPR019787 -
Cma05g00416 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cma05g00416 253 MobiDBLite consensus disorder prediction 145 193 - -
Cma05g00416 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Cma05g00416 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00416 Cma12g00657 CCT
Cma05g00416 Cma12g00657 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00416 Cma-Chr5:1869933 Cma05g01413 Cma-Chr5:10511813 2.85E-135 dispersed
Cma12g00657 Cma-Chr12:3506288 Cma05g00416 Cma-Chr5:1869933 3.18E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35053 PF12165 Alfin 2.10E-69 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00416 - - csv:101208889 464.922