Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00417 ATGGCCGCAGACAATGGAAGTAAGAGGCTTTCCGAAGCCGCCATTGAAGGCAACGTAACAACGTTGTTAGAGCTGCTCCGACAGGATCCTATGTTGCTGGCCAGAGTTAACCTCAACGACTTCAACGAGACGCCTCTACACGTGGCGGCTCTTCTTGGACACGTCGGATTTGTGGATGAGATTCTGAAGCGAAGGCCTCAGCTGGCTAAGGAGTTGGATTCCCGCCGTTTTTCAGCCCTCCACTTGGCGGCCGCCGAAGGGTTTGTGGAAATTGTGAAACTTCTGCTGCGAGTTGATGCTGGTATGTGCTTTGTCTGCAACCAAGATGGCCGGAACGCTATCCACCTCGCCGCCGTTAGAGGCCGGCTTGATGTCTTGGCTGAGCTCGTCCGTGTCCGACCGGCTGCTGCTCGGATGGCGGTGGACGGCGGCGGAACGGTGTTGCATTTATGTGTGAAGTATAACCAGGTGGAAGCGCTGAAGAAGCTGATTGAAACTGTGGCTGTGGATGACAGTCACTTTGTTAATGCTCAGGATGATTATGGCTTCACTATCCTCCATCTTGCTGTCTCCATGAAACAACTTCAGGCTGTGGAGTACCTAATCAACCATACAAGAATCAAAGTAAATGCCAAAACCACAAATGGGTTAACAGCTCTGGACATTCTAACTCAAAGCCATAGAGATTTAAAGGACATGGACATCGCAGAGACTCTCACAGCTGCCAATGCCATCCGAACCACACCAAAGAAGCCTCCATCATCGTCGATGTCACAGTCGTCTTCTTCGCCTTCTTCCTGTGTCAGCAAAATGGAAAAGACTCAATCTTGGAAATGGCTTCTCTCCGCCGTCTTCCACAACGGAGATTGGTGGTTCTTTAACCAGAAAAGCGAGTGGCTGAGGAAGCAAGATTCATTAATGGTGGTGGCATCACTGATCGCGACAATGGCTTTTCAAGCCGGAGTCAACCCTCCCGGCGGCATTTGGCAAGACGATAAAGCCTCAGGGAACCCAAATCAGCCGGCCGGAACGTCGATATTCGCCGGAAAACACCTACAAACCTATAATAAGTTTCTGGTGTTTAACACAATGGGATTCATGACTTCCCTGATTGCGATTCTGATGATAATCACTGGGTTGCCGGAGAAACGCATTTTCATGAGGGTTTTGATCGTTACGATGTGGATTGCAGTGAGCTCCATGGCTTATACTTATGGATACTCCATTAGGTTCTTCACTCCACGAGCACCAAAACTCTCAGGCTCCGGTACTCCGTCGGGAGCCGACTCCGTCATCTTTTTGATTGCCATTTTGGTGGCGATAGTGGCTACTTCTTCAATCGGTCTGTTCTTGATTGGGAAGCTTTTCTACGTTCATTCTCGACAGAATAAGTCTACTAAGCAACCAGTCCCATCCGAACAAATTTAA 1428 49.37 MAADNGSKRLSEAAIEGNVTTLLELLRQDPMLLARVNLNDFNETPLHVAALLGHVGFVDEILKRRPQLAKELDSRRFSALHLAAAEGFVEIVKLLLRVDAGMCFVCNQDGRNAIHLAAVRGRLDVLAELVRVRPAAARMAVDGGGTVLHLCVKYNQVEALKKLIETVAVDDSHFVNAQDDYGFTILHLAVSMKQLQAVEYLINHTRIKVNAKTTNGLTALDILTQSHRDLKDMDIAETLTAANAIRTTPKKPPSSSMSQSSSSPSSCVSKMEKTQSWKWLLSAVFHNGDWWFFNQKSEWLRKQDSLMVVASLIATMAFQAGVNPPGGIWQDDKASGNPNQPAGTSIFAGKHLQTYNKFLVFNTMGFMTSLIAILMIITGLPEKRIFMRVLIVTMWIAVSSMAYTYGYSIRFFTPRAPKLSGSGTPSGADSVIFLIAILVAIVATSSIGLFLIGKLFYVHSRQNKSTKQPVPSEQI 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1876325 1878855 - CmaCh05G004170.1 Cma05g00417 294535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00417 475 SMART ANK_2a 215 248 IPR002110 GO:0005515
Cma05g00417 475 SMART ANK_2a 143 174 IPR002110 GO:0005515
Cma05g00417 475 SMART ANK_2a 41 70 IPR002110 GO:0005515
Cma05g00417 475 SMART ANK_2a 5 34 IPR002110 GO:0005515
Cma05g00417 475 SMART ANK_2a 75 104 IPR002110 GO:0005515
Cma05g00417 475 SMART ANK_2a 109 138 IPR002110 GO:0005515
Cma05g00417 475 SMART ANK_2a 181 211 IPR002110 GO:0005515
Cma05g00417 475 ProSiteProfiles Ankyrin repeat profile. 75 100 IPR002110 GO:0005515
Cma05g00417 475 ProSiteProfiles Ankyrin repeat region circular profile. 75 100 - -
Cma05g00417 475 Pfam Domain of unknown function 301 409 IPR026961 -
Cma05g00417 475 Gene3D - 1 289 IPR036770 -
Cma05g00417 475 SUPERFAMILY Ankyrin repeat 10 226 IPR036770 -
Cma05g00417 475 PANTHER CASKIN 8 415 - -
Cma05g00417 475 MobiDBLite consensus disorder prediction 243 267 - -
Cma05g00417 475 Pfam Ankyrin repeats (3 copies) 144 212 IPR002110 GO:0005515
Cma05g00417 475 Pfam Ankyrin repeats (3 copies) 77 130 IPR002110 GO:0005515
Cma05g00417 475 PANTHER - 8 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00417 - - - bhj:120075898 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00417 Cma-Chr5:1876325 Cma09g01233 Cma-Chr9:8227005 2.35E-50 dispersed
Cma14g01245 Cma-Chr14:9850523 Cma05g00417 Cma-Chr5:1876325 5.59E-14 dispersed
Cma12g00059 Cma-Chr12:213606 Cma05g00417 Cma-Chr5:1876325 1.83E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00417 Cma_Chr05 FPKM 7.872385 8.170188 8.315762 8.651762 12.602794 10.658274 11.100918 45.694099 42.737514 45.14954