Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00420 ATGGAGGAGATGTCCTCAGCGGTTGTGGTGCCATTTAGGGTAGGTAATTCAGTCTGTGATAACCCCAACATGGCTACCCCCATGGATATCACAAGACTTAAGCTCATGGCAGATACTGCCGGTTTGTTATCCGACTCTGTTACGAAGGCTTCGGACGATTCGATTGAAGTAGTTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGATTGGTATTGCTGCTGTTTCGGTTACGAATGATGATAAGTGCGAAAGCGTTCCGTTATCGGTTGTGTTATCTCAAAGTAGTAGCAATTGGGTTGCGGCGGATGAGACCATATCGGTTGGATGTGAGGAAGATGATTGTTTATCCTTAGAGGGTGAACAGATTTATGATAGTTCTTGTTCACATTCAGTGGTTAGTGAAACTAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCGTTTTTCGAAGCGTTTGATTCGATTACCAATGCGAAGGACGTTAGCTGCGTCGAGATTGCAGCGAAAGGTAATATTGCGAGTTCTTCTTCTGCAGCTGTTAGCCTTGAAGATGATGTTGGAGATGCATTAGGAAATGAAGCATGTAATAACATGGTTCTTCAGCTGCCTATTGAGGAAAGGGCGAGTGAACCGGTTAGTCGAAGCGTTTTCGAGGTAGATTGTGTACCCCTTTGGGGATTTACGTCGGTCTGTGGAAGAAGACCCGAGATGGAAGATGCTGTAGCAACGGTACCTAAGTTTTCAGAACTTCCTATCCAAATGCTTGTTGGTGACCGAGTTTTCGATGGCTCGAGCAAGGCTATAGCTCATCAAACCGTTCATTTTTTCGGGGTTTACGATGGTCATGGTGGCTTTCAGGTCGCTAATTATTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGATATAGCTGCTGGTAATATAAAGGATGATTGTCAAGAGCTATGGAGAAAGGCATTCACCAAATGCTTTGTAAAAGTTGATGCTGAAATTGGAGGGGGACCTGGTGTTGAGCCTGTTGCACCAGAAACTGTTGGCTCCACTGCTGTTGTTGCCATTATCTGTGCATCTCATATCATTGTTGCAAATTGTGGCGACTCGAGAGCCGTTCTTTGTCGTCGGAAGGAGCCGGTGGCATTGTCCGTGGATCACAAACCGAACAGAGAAGATGAATACGAACGGATTGAGGCTGCAGGTGGGAAGGTCATACAGTGGAACGGGCACCGTGTTTTTGGTGTTCTAGCGATGTCGAGATCGATCGGTGATAGATACTTGAAACCATGGATCATCCCGGAGCCAGAAGTGATGTTCATCCCTCGAGCAAAAGACGACGAATGTCTCGTTCTAGCCAGCGATGGTTTATGGGACGTGATGTCAAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTTCTTTGGCACAAGAAGAACGGTGTCAGTTTACCTTCTGAGAGAGGGGTGGGGGTTGATCCTGCAGCCCAAGCAGCCGCAGAATACCTCTCGAAACGAGCTCTTCAAAAGGGCAGCAAAGACAACATCACGATCGTCGTGATTGATTTGAAAGCTCATTGGAAGTTCAAGACGAAATCATAA 1629 45.98 MEEMSSAVVVPFRVGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDSIEVVSDDCKSSNGEEEIGIAAVSVTNDDKCESVPLSVVLSQSSSNWVAADETISVGCEEDDCLSLEGEQIYDSSCSHSVVSETSSICGDDFLGSEVSFFEAFDSITNAKDVSCVEIAAKGNIASSSSAAVSLEDDVGDALGNEACNNMVLQLPIEERASEPVSRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPKFSELPIQMLVGDRVFDGSSKAIAHQTVHFFGVYDGHGGFQVANYCRERMHLALSEEIELAKQDIAAGNIKDDCQELWRKAFTKCFVKVDAEIGGGPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRRKEPVALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFIPRAKDDECLVLASDGLWDVMSNEEVCDLARRRILLWHKKNGVSLPSERGVGVDPAAQAAAEYLSKRALQKGSKDNITIVVIDLKAHWKFKTKS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1893659 1897155 - CmaCh05G004200.1 Cma05g00420 294538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00420 542 Gene3D - 215 542 IPR036457 -
Cma05g00420 542 ProSiteProfiles PPM-type phosphatase domain profile. 228 532 IPR001932 -
Cma05g00420 542 CDD PP2Cc 230 532 IPR001932 -
Cma05g00420 542 PANTHER ALPHABET, ISOFORM E-RELATED 137 541 - -
Cma05g00420 542 ProSitePatterns PPM-type phosphatase domain signature. 279 287 IPR000222 GO:0043169
Cma05g00420 542 SUPERFAMILY PP2C-like 223 533 IPR036457 -
Cma05g00420 542 Pfam Protein phosphatase 2C 235 525 IPR001932 -
Cma05g00420 542 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 137 541 - -
Cma05g00420 542 SMART PP2C_4 218 530 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00420 Cma12g00652 CCT
Cma05g00420 Cma12g00652 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01782 Cma-Chr2:9923939 Cma05g00420 Cma-Chr5:1893659 4.90E-21 dispersed
Cma05g00420 Cma-Chr5:1893659 Cma14g01254 Cma-Chr14:9939265 2.46E-163 dispersed
Cma16g00168 Cma-Chr16:732523 Cma05g00420 Cma-Chr5:1893659 1.64E-73 dispersed
Cma16g00062 Cma-Chr16:273810 Cma05g00420 Cma-Chr5:1893659 3.01E-73 transposed
Cma12g00652 Cma-Chr12:3443551 Cma05g00420 Cma-Chr5:1893659 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00420 K14497 - csv:101207918 926.776