Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00422 ATGCCTCCGCATCCACCGGAAGATGGGATTCCCTTGAACACCACGGCGGTGGCCATTGACAAGGATAAGAACAGCCAACACGCCGTCCGTTGGGCTATTGATCATCTGGTCATAAACAACCCACTTATCATTCTCATCCATGTTAGGCATAAAGCTTATCAAAATCATCAGGACGCGGGCGATTCTGAAAATGGTGAAACTGATGCGCAGCAGCTGTTTGTTCCCTATCGTGGATATTGTGCTCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGAACATGATATTCCCAAAGCGCTCGTTGACTACGCTCACAAGAATTGTATCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGTGCTCTAGCAAGGAAATTTAAAGGCCCTGATGTTCCAACCAGCGTAATAAAAATTGCCCCAGAATTTTGTTCTGTGTACGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCCATGCCACCGAAACAACCGTCGCCGCTTGGAGTTCAGCCAATTGCTCTACCAGACAGCAGCAGTGAACAAGAAAACGGAGCCAAAGGGCAACCAGCGAAGGAAGGATGGAAATATGCAGGTTCAGATAGAATGCTCAACGAAAGAAATGGTGGAAAGCCAGCAAAAGCGTTGACCCGTGAGAGACCGAAAACTTCTCCGTCTAATATATCAATAGAAAACGTAGAGGTTTCGAATCGAGGGCCTAGGTCTTCATTTAGCCGTGATTCAATCTCTGATGACAATCTGTTGAATGCACAGATGCCTTTTGGTTCATTGGACGTGAATGCTCAAAATTTAGATTTCAGTACTATCTCAAATTTGTCAACGGACTCTGCTTCCTCACAATCTACTCGGGAACTAGAGGCTGAGATGAAAAGATTGAAGTTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGTAAAGAGGCAATCTCAGCCAAGAACAAGGCGAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGCCGCTCTAGCTATGGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATCAAGGCCAGACGAGAGGCAGAAGAGAAAAAACGAGCATTGTGTGCTTTAGCTCAGAATGACGTCCGATATAGAAAATACACTATAGAGGAGATTGAAGAGTCTACTGAAAGGTTCTCTGAAAAATTGAAGGTTGGAGAAGGTGGATACGGTCCTGTTTATGTAGGCAAGCTTGATCATACAGATGTTGCGATTAAAGTTTTAAGACCCGACGCTGCTCAAGGACGGAAGCAATTCCAGCAAGAGGTGGAGGTCCTTTGTTCTATTAGACATCCAAACATGGTCCTTCTTCTTGGGGCATGCCCCGAGTATGGTTGCTTAGTATATGAGTACATGCAGAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATATCTGCTGAAATTGCTACTGCACTCCTTTTTCTTCACCAAGCAAAGCCAGATCCGCTAGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAATTTTGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGGTTAGTCCCACCTTCTGTAGTTGATCAAGTCACTCAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCTGAGTACCAACAAACAGGGAAGTTAACAACGAAATCGGATATTTACTCGTTTGGAATAATGTTACTTCAAATCATTACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCTATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTCCAGATTGTCCATTGGAGGAGGCTATAAGTTTTGCAAAACTGGCATTGAATTGCGCTGAACTGAGGAAGAGAGACAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATCTTGGGAGGAGTTCTGACAAACGTGAAAGCCGGAGTCTACTTCTACGCTCTGCTGCATCAAGTTCCAATTCGAGGCCACAGTCATCAAATGAGGATTCCAACGTATGA 2208 45.2 MPPHPPEDGIPLNTTAVAIDKDKNSQHAVRWAIDHLVINNPLIILIHVRHKAYQNHQDAGDSENGETDAQQLFVPYRGYCARKGVQLKEVVLDEHDIPKALVDYAHKNCINNFVVGASTRSALARKFKGPDVPTSVIKIAPEFCSVYVISKGKIISARAALRPVANTAMPPKQPSPLGVQPIALPDSSSEQENGAKGQPAKEGWKYAGSDRMLNERNGGKPAKALTRERPKTSPSNISIENVEVSNRGPRSSFSRDSISDDNLLNAQMPFGSLDVNAQNLDFSTISNLSTDSASSQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAMAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEIKARREAEEKKRALCALAQNDVRYRKYTIEEIEESTERFSEKLKVGEGGYGPVYVGKLDHTDVAIKVLRPDAAQGRKQFQQEVEVLCSIRHPNMVLLLGACPEYGCLVYEYMQNGSLEDRLFRRGNTPPLSWRRRFKISAEIATALLFLHQAKPDPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVVDQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTIPDCPLEEAISFAKLALNCAELRKRDRPDLGTVIVPELNRLRDLGRSSDKRESRSLLLRSAASSSNSRPQSSNEDSNV 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1899419 1904196 + CmaCh05G004220.1 Cma05g00422 294540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00422 735 PANTHER OS02G0152300 PROTEIN 14 726 - -
Cma05g00422 735 SMART serkin_6 432 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00422 735 Gene3D Transferase(Phosphotransferase) domain 1 505 718 - -
Cma05g00422 735 Pfam Universal stress protein family 17 141 IPR006016 -
Cma05g00422 735 Gene3D Phosphorylase Kinase; domain 1 410 504 - -
Cma05g00422 735 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 148 - -
Cma05g00422 735 ProSiteProfiles Protein kinase domain profile. 432 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00422 735 Coils Coil 298 318 - -
Cma05g00422 735 CDD STKc_IRAK 438 698 - -
Cma05g00422 735 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 14 726 - -
Cma05g00422 735 Gene3D HUPs 12 151 IPR014729 -
Cma05g00422 735 SUPERFAMILY Protein kinase-like (PK-like) 416 690 IPR011009 -
Cma05g00422 735 MobiDBLite consensus disorder prediction 229 258 - -
Cma05g00422 735 MobiDBLite consensus disorder prediction 702 735 - -
Cma05g00422 735 Pfam Protein tyrosine and serine/threonine kinase 437 690 IPR001245 GO:0004672|GO:0006468
Cma05g00422 735 MobiDBLite consensus disorder prediction 714 735 - -
Cma05g00422 735 CDD STK_N 14 152 - -
Cma05g00422 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Cma05g00422 735 Coils Coil 358 404 - -
Cma05g00422 735 MobiDBLite consensus disorder prediction 166 258 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00422 Cma12g00651 CCT
Cma05g00422 Cma12g00651 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00422 Cma-Chr5:1899419 Cma05g00620 Cma-Chr5:3113792 0 dispersed
Cma08g00785 Cma-Chr8:4725043 Cma05g00422 Cma-Chr5:1899419 0 dispersed
Cma12g00277 Cma-Chr12:1436928 Cma05g00422 Cma-Chr5:1899419 0 wgd
Cma12g00651 Cma-Chr12:3436563 Cma05g00422 Cma-Chr5:1899419 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68574 PF07714 PK_Tyr_Ser-Thr 1.80E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00422 - - csv:101203326 1157.9