Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00423 ATGGCTGGTATGGCAGCTGAAGGATCCCAATTTGATGCACGTCAATTTGATTCCAAGATGAATGATTTGCTTGGGGGAGATGGCCAAGACTTTTTCACCTCATATGATGAAGTCTATGAGAGTTTTGATTCCATGGGTTTGCAGGAGAATCTCTTAAGAGGAATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGAGGTATTGTTCCATTCTGTAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCCACTTTCTGCTCTGGAATTTTGCAGCAGCTAGATTATGGCCTAGTTGATTGCCAGGCATTAGTTCTTGCACCCACCCGAGAACTGGCACAACAGATTGAAAAGGTAATGCGTGCATTAGGTGATTATCTTGGTGTCAAGGTCCATGCTTGTGTTGGTGGAACCAGTGTTCGCGAAGATCAACGCATTCTCTCAAGTGGTGTCCATGTTGTTGTTGGCACCCCTGGTCGTGTGTTCGATATGCTGCGGAGGCAGTCACTTCGCCCCGATCACATTAAGATGTTTGTGCTGGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATTTACGATATTTTCCAGCTTCTTCCTCCAAAGATTCAGGTTGGGGTTTTCTCTGCTACAATGCCCCCTGAAGCTCTCGAGATAACAAGGAAATTTATGAATAAACCCGTGAGAATTTTGGTGAAACGTGATGAGCTCACCCTTGAGGGTATCAAGCAATTCTATGTCAACGTCAATAAAGAAGAGTGGAAACTCGAGACTCTTTGCGACCTTTATGAAACTCTTGCAATTACCCAGAGTGTCATTTTTGTGAATACCAGGCGCAAAGTTGATTGGCTGACCGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACACATGGAGACATGGACCAAAACACTAGAGATATCATCATGCGGGAGTTTCGATCTGGTTCATCCCGTGTTCTCATTACTACTGATCTCTTGGCTAGGGGAATCGATGTCCAACAAGTTTCCCTCGTCATAAATTTTGATCTTCCTACTCAGCCAGAGAATTACCTCCATCGAATCGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCCATCAATTTTGTGACCACAGAGGATGAAAGAATGCTGTTTGACATCCAAAAGTTCTACAATGTCATGGTCGAGGAGCTGCCAGCAAACGTTGCCGATCTCATTTGA 1242 44.69 MAGMAAEGSQFDARQFDSKMNDLLGGDGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVNKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVMVEELPANVADLI 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1908259 1911834 + CmaCh05G004230.1 Cma05g00423 294541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00423 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Cma05g00423 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Cma05g00423 413 SMART ultradead3 59 256 IPR014001 -
Cma05g00423 413 CDD DEADc_EIF4A 45 242 - -
Cma05g00423 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Cma05g00423 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Cma05g00423 413 CDD SF2_C_DEAD 253 383 - -
Cma05g00423 413 PANTHER RNA HELICASE 23 413 - -
Cma05g00423 413 SMART helicmild6 293 374 IPR001650 -
Cma05g00423 413 Gene3D - 249 413 IPR027417 -
Cma05g00423 413 Gene3D - 30 248 IPR027417 -
Cma05g00423 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cma05g00423 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cma05g00423 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Cma05g00423 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00052 Cma-Chr1:206398 Cma05g00423 Cma-Chr5:1908259 0 dispersed
Cma05g00423 Cma-Chr5:1908259 Cma17g00712 Cma-Chr17:5877920 0 dispersed
Cma14g00252 Cma-Chr14:1097817 Cma05g00423 Cma-Chr5:1908259 2.62E-64 dispersed
Cma05g00423 Cma-Chr5:1908259 Cma14g01252 Cma-Chr14:9927541 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00423 K03257 - jre:109008881 792.341