Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00425 ATGGCAGAAGAGGAACCTGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTGGAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTAAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGAGAAGACAGCGTCCGCGGAGACCAACGAGACATAG 423 51.54 MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1918047 1918469 + CmaCh05G004250.1 Cma05g00425 294543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00425 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Cma05g00425 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 129 - -
Cma05g00425 140 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 3 129 - -
Cma05g00425 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Cma05g00425 140 SUPERFAMILY Histone-fold 11 91 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00886 Cma-Chr2:5260621 Cma05g00425 Cma-Chr5:1918047 4.89E-10 dispersed
Cma05g00425 Cma-Chr5:1918047 Cma18g00830 Cma-Chr18:7248093 1.25E-11 dispersed
Cma12g00075 Cma-Chr12:281372 Cma05g00425 Cma-Chr5:1918047 2.09E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35055 PF00808 CBFD_NFYB_HMF 3.00E-21 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00425 - - cmo:103488501 216.083