Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00437 ATGGAAGAACTAGAGAAGGGGAAAATGGGGAGCCGGAGCCGGAGCCGGAGCCGGAGCATTAGGCAAAGAAGTGGCCGGAGCATCGAGTACGTGTTGTCCGGCGGCAGAAATTCGAGAAGGCTTAGCCATGCCGAAGAAGACGAAGAGGCTTTGCGATGGGCGGCGATAGAGAAACTTCCAACCTACGACCGATTAAGAACAAGCATCTTCAAATCCTTCACCGAATCCGGCGAAATCGGAAGCAGCCAATCGCAGGCCATTCTGCACAAACAGGTAGACGTTCGGAGGCTCGACATGGATGATCGGCGGATGTTCATGGAAAGTACCTTCAAGGTCGCAGAGGAAGATAACGAGAAGTTCTTGAAGAAACTTAGAGATCGAATCGATCGAGTTGGAATTAATCTGCCGACTGTTGAAGTGAGATTCGAGAACTTGACGGTACACGCCAATTGCCAAATCGGAAACAGAGCACTTCCTAGTCTTCCGAATGCGATTCGAGATGTGGTGGAATCGGCTCTGAGTTTGATCGGAATCAATTTGGCGAAGACCGCCAAATTCACCATTCTCAAAGACGTCTCCGGGATCGTCAAACCTTCTAGGATGAGCTTGCTGCTGGGTCCCCCATCATCAGGCAAGACGACCTTACTTTTGGCGCTGGCGGGAAGGTTGGACCAAAATTTAAAGATTAAAGGAGAAATTACATACAATGGAAACAAGTTAAACGAATTTGTACCTCAAAAAACGTCTGCATATATAAGCCAAAATGATATCCATATTGGAGAAATGACAGTAAAAGAAACGCTTGATTTCTCAGCACGATGTCAAGGAATTGGTACTCGATATGAATTACTGAGTGAGCTTGCAAGAAGAGAAAAGCAAGCCGGAATTTTGCCAGAGGCTGAACTCGATCTGTTTATGAAGGCCACAGCAATGGAAGGAGTTGAAAGTAGTATGATTACTGATTACACCCTCAAAATATTAGGACTTGATATTTGTAAGGACACTATTGTCGGAGATGAGATGCAACGTGGCATATCTGGAGGTCAAAAGAAACGAGTAACCACAGGTGAAATAATAGTGGGTCCTACAAAAACATTATTTATGGACGAAATATCAACGGGTCTAGATAGCTCCACGACGTATCAAATAGTGAAGTGCCTCCAACAGATCGTGCACCTCACGGAAGCTACGGTGGTCATGTCCTTACTACAGCCCACTCCGGAGACGTTCGATCTTTTTGATGACATCATCCTCTTATCAGACGGTCAGATCGTGTACGTGGGCCCACGAGAACACGCACTGGAATTCTTCCAATCCTGTGGGTTCCAATGCCCGGACCGGAAGGGAACCGCCGATTTTTTACAAGAGGTAACCTCAAAGAAGGACCAAAGGCAATACTGGGCGAACGAAAGCGAGCCATACCGATTCATAACGGTTCAAGAATTTGCAAGGCGATTCAAGCGATTCCATGTGGGGAAGAGTATCGGAAACGAATTGTCAGTCCCGTACGACAAGTCGTTAGGGCACAGAGCGGCGCTGGTGTACAAAAAGTACTCATGCCCTAAATTAGAGCTTCTGAAGGCCTGCGTCGACAAGGAATGGCTACTGATAAAGCGAAATTCGTTCATTCATATCTTCAAGATGGTTCAGCTAATCGTGGTAGGGTTTGTGGCCGCGACGGTGTTCTTCAGGACGAAAATGCATCACCGGGATGAAGAAGACGGTGCGATTTATATTGGGGCTTTGATTTTCGCGATGATGGTGAATATGTTCAATGGATATGCGGAGATTGCGCTGACGATTGTGAGGCTGCCGGTGTTCTTTAAGCAAAGGGATCTTCTGTTTCACCCGCCGTGGACTTACACCCTCCCTACTGTTCTTCTTCGGCTCCCTTTCTCTGCGCTTGAATCTTTCGTTTGGGTGGTTCTCACTTATTACACCATTGGATTTGCTCCCGAAGCTTCCAGGTTTTTCAAGCAATACTTGGTGATGTTTCTAGTCCAACTAGTGGCTTCTGGGCTCTTTAGGTTCATTGCTGGTTGCTGCAGGACCATGATAATTGCCAACACTGGAGGCTCTCTCACTCTCTTAATTGTGTTCATGCTTGGTGGTTTCACTCTTCCTAAAGGTGACATTCCCAAGTGGTGGATTTGGGGCTACTGGATTTCACCAATGTCTTATGGTTACAATGCGATTGGCGTAAACGAAATGCTCGCTCCTAGGTGGATGAACAGGCTGGCTTCAGACAACAAAACCCCGTTGGGTTTGGCTGTGCTTAAGAACTTTGATATCTTCCAAGATAAAAATTGGTTTTGGATTGGAGTTGGAGCTCTTTTGGGATTCACAATCCTCTTCAATGTCCTTTTCACGCTTTCACTTATGTACCTAAACCCTCCTGGGAGGCCACGGGCGACAGTATCAGAAGAATCAACAGAAGAGTTGGAATACGAGCAGGATGTAAAAGAACCGACTACGAGACAATCCGAGTCAAAAACAGATTCAATGACTAGATCATTATCCTCTTCTGATGGGAACAACACACGAGAAATGACGATTTGGCGAATGAGCAGCAGATCTTCTGACAGTGGACGCGGTGGGGACAGAGACACTAATTCCCCTCTTAGCAATGTTGTCAATACAAGGAGAGGAATGGTTCTTCCATTCACTCCTCTTGCAATGTCCTTCGATACTGTAAATTACTATGTCGACATGCCCTCTGAAATGAAGAACCAAGGGGTCAAAGATAATAGACTTCAACTACTTCGTGAAGTCACTGGTGCTTTTAGGCCTGGTGTCCTCACTGCACTGATGGGTGTTAGTGGGGCTGGAAAGACAACTCTGATGGATGTTCTAGCTGGGAGGAAAACAGGCGGCTATATTGAAGGTGATATTAAAATTTCAGGATTTCCCAAGAAACAAGAAACATTTGCAAGAATTTCTGGATATTGTGAACAAAATGATATCCACTCTCCTCAAGTTACGGTTCGAGAATCCTTGATTTACTCGGCTTTCTTAAGGCTCCCTAAAGAAGTTAGCAACAAGGACAAGATGGCTTTTGTGGATGAAGTGATGGAACTGGTGGAGCTCAAAAATCTTAGTGATGCCATAGTAGGGCTGCCTGGCATTACAGGACTGTCTACCGAGCAGAGAAAGAGGTTAACAATTGCAGTCGAGCTTGTTGCTAATCCTTCAATCATTTTTATGGATGAACCGACATCGGGACTCGATGCAAGAGCAGCTGCCATTGTAATGAGAACGGTTCGGAATACGGTGGATACTGGTAGAACTGTTGTGTGTACAATTCACCAACCTAGCATTGATATATTTGAAGCCTTTGATGAGCTACTTTTGATGAAAAGGGGAGGACAAGTGATCTACTTTGGACCTCTCGGTCGCAATTCTAAGAAGCTAATCGAATATTTTGAGGCTGTTCCGGGAGTGTCGAAAATTAAGGAAAAGTACAATCCGGCCGCCTGGATGCTGGAGGTTACCTCAGTAGCAGCTGAAGTTCAGCTTAAAATGGACTTCGCTGAACATTACAGGGCATCATCTTTATATCAGCGAAATAAGGCATTAGTAAAGGAGTTAAGCACACCACCACCTGGATCAGTAGACCTCTATTTTGCTTCTCAATACTCCCAAACCATGTGGGGGCAGTTCAAATCTTGCCTGTGGAAGCAGTCATGGACGTACTGGAGGAGTCCTGATTACAACCTTGTTAGGTTTTTTTTCACTTTAGCTGCTTCCCTTATGTTGGGAACCATTTTCTGGAAAGTTAGCTCCAAAATGGATGGAGTACAGGATCTAAACACGATTATTGGAGCAATGTATTCTTCTGTCTTGTTTATTGGAGTGAACAACTGCTCTACCGTACTGCCAGTAGTCGCTACCGAAAGAACCGTGTTTTATCGAGAGAGAGCTGCGGGGATGTATTCTGCATTACCTTATGCCCTTGCTCAGGTGATAATCGAAATACCATACGTCTTCGTCCAGACAGTTTACTATACTCTCATCGTATATGCAATGGTTGACTTTGAGTGGACAGCTGCAAAATTCTTCTGGTTCTTCTTTGTCAACTTCTTTACCTTCCTCTACTTCACATATTATGGCATGATGACAGTTTCTGTCACACCAAACCACCAAGTTGCCTCCATTTTAGCAGCAGCTTTCTATATACTCTTCGTTCTCTTCTCTGGCTTCTGCATCCCAAGACCAAAAATCCCAAAATGGTGGATATGGTATTACTGGATTTGCCCATTGTCATGGACTGTATATGGGATGATTGCATCCCAGTATGGTGATGTAGAGACTCTTATCAAAGTGCCTGGAGCAAAAGACACAACAGTCAAATCATATATTGAAGACTATTATGGGTACCACTCAGATTTTATGGGCCCTGTGGCTGCAGTTCTGGTGGGCTTCACAGTCGTCTTTGCCCTTCTCTATGCACGGTGCATTAAGACAATGAACTTCCAAACAAGATAG 4485 45.08 MEELEKGKMGSRSRSRSRSIRQRSGRSIEYVLSGGRNSRRLSHAEEDEEALRWAAIEKLPTYDRLRTSIFKSFTESGEIGSSQSQAILHKQVDVRRLDMDDRRMFMESTFKVAEEDNEKFLKKLRDRIDRVGINLPTVEVRFENLTVHANCQIGNRALPSLPNAIRDVVESALSLIGINLAKTAKFTILKDVSGIVKPSRMSLLLGPPSSGKTTLLLALAGRLDQNLKIKGEITYNGNKLNEFVPQKTSAYISQNDIHIGEMTVKETLDFSARCQGIGTRYELLSELARREKQAGILPEAELDLFMKATAMEGVESSMITDYTLKILGLDICKDTIVGDEMQRGISGGQKKRVTTGEIIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVVMSLLQPTPETFDLFDDIILLSDGQIVYVGPREHALEFFQSCGFQCPDRKGTADFLQEVTSKKDQRQYWANESEPYRFITVQEFARRFKRFHVGKSIGNELSVPYDKSLGHRAALVYKKYSCPKLELLKACVDKEWLLIKRNSFIHIFKMVQLIVVGFVAATVFFRTKMHHRDEEDGAIYIGALIFAMMVNMFNGYAEIALTIVRLPVFFKQRDLLFHPPWTYTLPTVLLRLPFSALESFVWVVLTYYTIGFAPEASRFFKQYLVMFLVQLVASGLFRFIAGCCRTMIIANTGGSLTLLIVFMLGGFTLPKGDIPKWWIWGYWISPMSYGYNAIGVNEMLAPRWMNRLASDNKTPLGLAVLKNFDIFQDKNWFWIGVGALLGFTILFNVLFTLSLMYLNPPGRPRATVSEESTEELEYEQDVKEPTTRQSESKTDSMTRSLSSSDGNNTREMTIWRMSSRSSDSGRGGDRDTNSPLSNVVNTRRGMVLPFTPLAMSFDTVNYYVDMPSEMKNQGVKDNRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSNKDKMAFVDEVMELVELKNLSDAIVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYFGPLGRNSKKLIEYFEAVPGVSKIKEKYNPAAWMLEVTSVAAEVQLKMDFAEHYRASSLYQRNKALVKELSTPPPGSVDLYFASQYSQTMWGQFKSCLWKQSWTYWRSPDYNLVRFFFTLAASLMLGTIFWKVSSKMDGVQDLNTIIGAMYSSVLFIGVNNCSTVLPVVATERTVFYRERAAGMYSALPYALAQVIIEIPYVFVQTVYYTLIVYAMVDFEWTAAKFFWFFFVNFFTFLYFTYYGMMTVSVTPNHQVASILAAAFYILFVLFSGFCIPRPKIPKWWIWYYWICPLSWTVYGMIASQYGDVETLIKVPGAKDTTVKSYIEDYYGYHSDFMGPVAAVLVGFTVVFALLYARCIKTMNFQTR 1494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1983570 1994133 - CmaCh05G004370.1 Cma05g00437 294555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00437 1494 MobiDBLite consensus disorder prediction 802 876 - -
Cma05g00437 1494 Gene3D - 174 483 IPR027417 -
Cma05g00437 1494 PANTHER ATP-BINDING CASSETTE TRANSPORTER 21 1494 - -
Cma05g00437 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 1130 IPR027417 -
Cma05g00437 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Cma05g00437 1494 Pfam Plant PDR ABC transporter associated 742 806 IPR013581 -
Cma05g00437 1494 Pfam ABC transporter 189 371 IPR003439 GO:0005524
Cma05g00437 1494 Pfam ABC transporter 921 1073 IPR003439 GO:0005524
Cma05g00437 1494 MobiDBLite consensus disorder prediction 829 876 - -
Cma05g00437 1494 CDD ABCG_PDR_domain2 890 1128 IPR034003 -
Cma05g00437 1494 Pfam ABC-transporter N-terminal 101 164 IPR029481 -
Cma05g00437 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 173 446 IPR003439 GO:0005524
Cma05g00437 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 893 1146 IPR003439 GO:0005524
Cma05g00437 1494 SMART AAA_5 930 1122 IPR003593 -
Cma05g00437 1494 SMART AAA_5 198 430 IPR003593 -
Cma05g00437 1494 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 21 1494 - -
Cma05g00437 1494 Pfam ABC-2 type transporter 404 457 IPR043926 GO:0140359
Cma05g00437 1494 Pfam ABC-2 type transporter 1102 1165 IPR043926 GO:0140359
Cma05g00437 1494 MobiDBLite consensus disorder prediction 1 27 - -
Cma05g00437 1494 CDD ABCG_PDR_domain1 185 428 IPR034001 -
Cma05g00437 1494 Pfam ABC-2 type transporter 525 736 IPR013525 GO:0016020|GO:0140359
Cma05g00437 1494 Pfam ABC-2 type transporter 1219 1432 IPR013525 GO:0016020|GO:0140359
Cma05g00437 1494 Gene3D - 907 1142 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00437 K08711 PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR - csv:101222892 2525.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01258 Cma-Chr2:7381797 Cma05g00437 Cma-Chr5:1983570 3.02E-49 dispersed
Cma05g00437 Cma-Chr5:1983570 Cma14g01294 Cma-Chr14:10218312 0 dispersed
Cma14g00462 Cma-Chr14:2240356 Cma05g00437 Cma-Chr5:1983570 0 dispersed
Cma05g00437 Cma-Chr5:1983570 Cma01g00122 Cma-Chr1:548483 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g365 . . . . . . . Bma01g02161 . . . Cma05g00437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001902 1 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 3 2 2 2 3 2 2 2 2 2 4 5 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00437 Cma_Chr05 FPKM 1.738583 1.827186 4.072831 4.079098 14.380362 14.083923 15.001922 3.711113 3.328162 3.473833