Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00441 ATGGTTGCCGGAGGAAGAGGCGCCGCCGTTGGCGTCGGTTTGGCGGTGGTAATGGTGGTGTTAGGGTTTCAGATTTGTTCTGCGCAGATTACCAGAAGCGGTTTTCCGAGCGGATTTGTTTTCGGAACTGCATCCTCTGCTTTTCAGTTCGAAGGAGCCGTGAAGGAGGACGGAAGGGGACCCACAGTTTGGGACAAATTTTCCCATTCATTTGGAAAGGTAGTTGATTTTAGCAATGCAGATGTGGCAGTGGACCAGTACCACCGTTATCCGGAAGATATTAAACTGATGAAGGATATGGGTATGGATGCCTACCGATTCTCCATTGCCTGGTCTCGAATCTTCCCAAATGGAAGTGGAGAGATCAACGAAGCTGGAGTTGATCATTACAACAATTTCATCAATGCTTTGTTAGCCAACGGAATCGAACCCTATGTCACTCTCTACCATTGGGACCTTCCTCAAGCTCTAGAAGACAAGTACAATGGCTGGCTCAGCCCCCAGATCATAAATGATTTCGCGATTTTCGCCGAGACGTGCTTCCAGAGGTTCGGCGATCGAGTGAAGCATTGGATCACCTTCAACGAACCGCATACATTCGCTACTCAGGGCTATGATGTCGGTCTCCAGGCGCCGGGGCGCTGCTCCATTCTTCTCCATTTTGTGTGTCGGAGTGGAAACTCTGCTACTGAGCCTTACATTGTTGCGCACAATGTTCTCCTCTCTCACGCCACCGTCTCTGATATTTACAGAAGAAAGTACAAGAGGAGACAGAGGGGAGTGATTGGGATCTCGCTTGATGTTATCTGGTTCGAACCAGGTTCGAATTCCACCGAGGACATTGCAGCTGCTCAACGAGCTCAAGATTTTCAGCTTGGATGGTTTCTCAACCCGTTGATCTTTGGTGATTATCCGACCTCCATGAGAAGCAGAGCTGGAGGGCGGCTTCCGAGGTTTTCACAGCCGCAGGCGGCTTTGGTGAAAGGGTCTCTGGATTTTGTTGGTATAAATCATTACACCACATTTTACGCTTATCATAACCACACCAACATTATTGGGGTTGTCCTGAATGACACCATTGCTGATTCTGGTGCCTTCACCGTTCCATTCAAGGGCCTGAAAACCATTGCAGAAAGGGCAAGTTCTATATGGTTATACATAGTTCCTCGTGGGATGCGAAGTTTAATGAATTACATCAAGAACAACTATGGAAACCCACTAGTGATCATCACAGAAAATGGGATGGACGATCCAAATAACCCATTTAAACCAATTAAAGAAGCGTTGAAGGATGAAAAGAGGATCAGATACCACGATGGCTACTTAACGAGCCTTCTGGCTGCCATTAAGGAAGATGGCTGCAATGTGAAAGGGTATTTTGTTTGGTCTCTATTGGATAATTGGGAGTGGGCAGCTGGTTTCACTTCAAGGGATAAGCGGAAGGAGATACTCCAAGGACTCGGTTCAATGGTTCAAGAATTTCTTGGCTTCTTAGAAGTCCGAGTATCTGAAAGAAGTTCCCCTCCGACGCCGATCATGGATCCTTCTCACAACCCCGATTCTCCGCCGAGTTTCTCCACCGCCGATTCCTCTACTATTTGGACCAACGCACTCCCCTCCGCCGATTCTTTTTACTTCTTTCCCGCCGATAGAGATTCCGCTGTCCTCACTGAATTCGGCTGGAATTTCCTCTCCCAAGATGCTCAACCTACTCGATTCCTCGACGACAAGCCTGATTTGCCTGGAACCTCCGAGCCGGCCGTCGATGAAACCGGCGGATTACAGAGTCCTGATGCTCCTGTTCCAGTCGCGTCGATTCCTTCAATGTCTTCCAGTTCCAGCGGAGAACCGCCGGAGAAACTGCCTGAGATTCCGCAGAAGGTCAAAAAGAAGGGGCAAAAGCGAATACGGCAGCCACGATTTGCATTCATGACTAAAAGCGAAGTTGATCATCTTGAAGACGGCTACCGGTGGAGGAAATATGGCCAAAAGGCTGTCAAGTACAGTCCATTTCCTAGGAGTTACTATAGATGCACGAACAGCAAATGCACAGTGAAGAAAAGGGTAGAACGGTCATCTGAAGATCCAAGCGTTGTGATAACAACATATGAAGGGCAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGACTTAACATGGCGCACAAAGCTGCTTTTGGGTCTCAATTTTCATCTCAAGGCGCACAGATTTATTACCCTGAAACTCAGCCGCCGCCCAGAAACAATAATAATAATGACACTCCCACTGCCCGTGACCACCACTCACAGCACTTGCCCACTGCAGCAGCATCGTCATCATCCAATGCGTTGTCGCTGGAGCAACAAGAACCAACAAACTCACAGCCTCAAGTTGCTTCGGACGAGGGCTTGCTAGGCGATATTGTGCCGCCCGGCATGATGCGTAGAACATGA 2436 48.65 MVAGGRGAAVGVGLAVVMVVLGFQICSAQITRSGFPSGFVFGTASSAFQFEGAVKEDGRGPTVWDKFSHSFGKVVDFSNADVAVDQYHRYPEDIKLMKDMGMDAYRFSIAWSRIFPNGSGEINEAGVDHYNNFINALLANGIEPYVTLYHWDLPQALEDKYNGWLSPQIINDFAIFAETCFQRFGDRVKHWITFNEPHTFATQGYDVGLQAPGRCSILLHFVCRSGNSATEPYIVAHNVLLSHATVSDIYRRKYKRRQRGVIGISLDVIWFEPGSNSTEDIAAAQRAQDFQLGWFLNPLIFGDYPTSMRSRAGGRLPRFSQPQAALVKGSLDFVGINHYTTFYAYHNHTNIIGVVLNDTIADSGAFTVPFKGLKTIAERASSIWLYIVPRGMRSLMNYIKNNYGNPLVIITENGMDDPNNPFKPIKEALKDEKRIRYHDGYLTSLLAAIKEDGCNVKGYFVWSLLDNWEWAAGFTSRDKRKEILQGLGSMVQEFLGFLEVRVSERSSPPTPIMDPSHNPDSPPSFSTADSSTIWTNALPSADSFYFFPADRDSAVLTEFGWNFLSQDAQPTRFLDDKPDLPGTSEPAVDETGGLQSPDAPVPVASIPSMSSSSSGEPPEKLPEIPQKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKYSPFPRSYYRCTNSKCTVKKRVERSSEDPSVVITTYEGQHCHHTVGFPRGGLNMAHKAAFGSQFSSQGAQIYYPETQPPPRNNNNNDTPTARDHHSQHLPTAAASSSSNALSLEQQEPTNSQPQVASDEGLLGDIVPPGMMRRT 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2013965 2025563 - CmaCh05G004410.1 Cma05g00441 294559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00441 811 MobiDBLite consensus disorder prediction 739 757 - -
Cma05g00441 811 Pfam Glycosyl hydrolase family 1 33 477 IPR001360 GO:0004553|GO:0005975
Cma05g00441 811 MobiDBLite consensus disorder prediction 739 811 - -
Cma05g00441 811 MobiDBLite consensus disorder prediction 571 636 - -
Cma05g00441 811 SUPERFAMILY (Trans)glycosidases 26 477 IPR017853 -
Cma05g00441 811 PANTHER GLYCOSYL HYDROLASE 15 477 IPR001360 GO:0004553|GO:0005975
Cma05g00441 811 SMART WRKY_cls 652 711 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma05g00441 811 SUPERFAMILY WRKY DNA-binding domain 644 710 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma05g00441 811 Pfam WRKY DNA -binding domain 653 709 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma05g00441 811 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 39 53 IPR033132 -
Cma05g00441 811 Gene3D WRKY domain 639 705 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma05g00441 811 MobiDBLite consensus disorder prediction 766 794 - -
Cma05g00441 811 ProSiteProfiles WRKY domain profile. 647 712 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma05g00441 811 PANTHER BETA-GLUCOSIDASE 6-LIKE 15 477 - -
Cma05g00441 811 PRINTS Glycosyl hydrolase family 1 signature 453 470 IPR001360 GO:0004553|GO:0005975
Cma05g00441 811 PRINTS Glycosyl hydrolase family 1 signature 431 442 IPR001360 GO:0004553|GO:0005975
Cma05g00441 811 PRINTS Glycosyl hydrolase family 1 signature 330 344 IPR001360 GO:0004553|GO:0005975
Cma05g00441 811 PRINTS Glycosyl hydrolase family 1 signature 408 416 IPR001360 GO:0004553|GO:0005975
Cma05g00441 811 MobiDBLite consensus disorder prediction 506 529 - -
Cma05g00441 811 Gene3D Glycosidases 22 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00441 Cma-Chr5:2013965 Cma13g00999 Cma-Chr13:7722261 2.29E-165 dispersed
Cma17g00379 Cma-Chr17:2109793 Cma05g00441 Cma-Chr5:2013965 1.90E-47 dispersed
Cma01g01164 Cma-Chr1:8482250 Cma05g00441 Cma-Chr5:2013965 0 transposed
Cma12g00094 Cma-Chr12:377660 Cma05g00441 Cma-Chr5:2013965 0 transposed
Cma12g00093 Cma-Chr12:370354 Cma05g00441 Cma-Chr5:2013965 1.14E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35056 PF00232 Glyco_hydro_1 2.30E-144 CL0058 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00441 K01188 - csv:101202924 885.174