Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00448 ATGCTCAATCCTGTAGTATTAGAAAACCATGACCAATTTTTATATTCAAGAGTGGCTATCTTTTCCATTTTTACTCATTTCTTTTCGAGTCTACAGCTTGAAACCCACAACCAAAACTCTCAAACTAATCCAACGGTTCAGATTCAGTCTTCTTCCTTCTCTGTCCTCCATTGCCAAAACCTCCATTTTCTCCCGCACCTTAACTTCCCCTTCCCCTCCTCCCTCTCTTCCTCTCTCTATTCTCTTCTTCTTCCCATTGTCTCTGCTTCTCTCTGTTGTTTTTCGCATTTTTTGTTCCGTTCTTTTCCGCTCTCTCAAACCATGTCTTCCGCCGAGAAGGAGAGAGAAACTCAGGTCTACATGGCCAAGCTTGCTGAGCAGGCCGAGCGCTATGACGAAATGGTTGAGTATATGAAGAATATTGCAAAGCTTGACCTCGAACTAACTGTAGAGGAGAGGAACCTTCTTTCTGTGGGGTACAAAAATGTGATTGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGTCTAAGGGGAATGAGAACATTGTAAAATTGATAAAGAGTTACCGCCAGAAAGTCGAGGAGGAACTTTCAAAGATTTGTGGTGATATTCTCTCTATCATAGACAAGCATCTAATCCCTCATTCGTCTGCTGCAGAAGCCACTGTCTTCTACTACAAGATGAAAGGTGATTACTATCGTTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAGGCTGCTGATCAGTCGTTGAAGGGATATGAGGCTGCCTCAGGCACTGCGAATACCGAACTCCCATCGACCCACCCAATCCGTCTTGGTCTTGCTCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTGATCATGCAGCTGTTGAGAGACAACCTCACACTCTGGACCTCAGATTTGCCTGAAGATGGCGGTGAGGAAAACTTCAAAGCTGAGGACTCCAAACCTGTTGAGCCGGAGGCCGCCCAGCAAGCGAAATGA 1119 44.77 MLNPVVLENHDQFLYSRVAIFSIFTHFFSSLQLETHNQNSQTNPTVQIQSSSFSVLHCQNLHFLPHLNFPFPSSLSSSLYSLLLPIVSASLCCFSHFLFRSFPLSQTMSSAEKERETQVYMAKLAEQAERYDEMVEYMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENIVKLIKSYRQKVEEELSKICGDILSIIDKHLIPHSSAAEATVFYYKMKGDYYRYLAEFKTDQDRKEAADQSLKGYEAASGTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENFKAEDSKPVEPEAAQQAK 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2058099 2062200 + CmaCh05G004480.1 Cma05g00448 294566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00448 372 ProSitePatterns 14-3-3 proteins signature 1. 153 163 IPR023409 -
Cma05g00448 372 ProSitePatterns 14-3-3 proteins signature 2. 325 344 IPR023409 -
Cma05g00448 372 Gene3D - 96 356 IPR036815 -
Cma05g00448 372 MobiDBLite consensus disorder prediction 345 372 - -
Cma05g00448 372 PRINTS 14-3-3 protein zeta signature 289 315 IPR000308 -
Cma05g00448 372 PRINTS 14-3-3 protein zeta signature 227 249 IPR000308 -
Cma05g00448 372 PRINTS 14-3-3 protein zeta signature 196 220 IPR000308 -
Cma05g00448 372 PRINTS 14-3-3 protein zeta signature 262 288 IPR000308 -
Cma05g00448 372 PRINTS 14-3-3 protein zeta signature 147 176 IPR000308 -
Cma05g00448 372 PRINTS 14-3-3 protein zeta signature 316 345 IPR000308 -
Cma05g00448 372 MobiDBLite consensus disorder prediction 349 365 - -
Cma05g00448 372 PANTHER 14-3-3 PROTEIN 110 362 IPR000308 -
Cma05g00448 372 Coils Coil 303 323 - -
Cma05g00448 372 SMART 1433_4 115 356 IPR023410 -
Cma05g00448 372 PANTHER BNAC03G57490D PROTEIN 110 362 - -
Cma05g00448 372 Pfam 14-3-3 protein 121 343 IPR023410 -
Cma05g00448 372 SUPERFAMILY 14-3-3 protein 114 345 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01697 Cma-Chr4:8531498 Cma05g00448 Cma-Chr5:2058099 1.04E-174 dispersed
Cma05g00448 Cma-Chr5:2058099 Cma11g01888 Cma-Chr11:12509581 2.98E-145 dispersed
Cma12g00101 Cma-Chr12:400660 Cma05g00448 Cma-Chr5:2058099 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00448 - K06630 csv:101221858 502.286