Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00460 ATGAGAACGGGGAAAAGCAATCAGGAAGATGAAGAGTATGAGGACGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTAATAGTAGCATCGGAAATAGCAAAGATGCGAAGAACAACGATAGGGCTAATGCCATACGGTCAAAGCACTCTGTCACCGAACAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGCGATCAGAAGAGAGATACCGCGTCATTTTTACTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCTTATCAGAATTGGAGTGGGGAGCCTACTAAGTTAATACCATGGAGAAACAGTCATTGGCGTATGCAGACTTTTGTTGGTCATCCACAGTCTGTAAAAAATGGTTCTGCTTCAGGACCAACGTATTCAGGGAAGTTTGATGACAACAACATTTCAATTTCCCCAGCCATGCTTGCAAGCTCACAAAATCCCCTCGACTCCCATTCAGGCAGAGATGTTCTGCAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATATACATGCTTCTATCCGTAGTGATGGTGTTCTTGATCAATCTCTCCAGATTCCAATTTCCAGTGGACAGGCAACGGAGTGTCCCATCGCCAACAATGCATCAAGCCAACCGGAAGAGATGGCCATTGAAGGGGGTACAATAAGCATTTCAAGTCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTGTCTCCATTCAGGTTGATCTTGGAAAGAGAGCAAATAAAGGTTTCCCATTTGGAATGCCCATTTTTAAGGAAACTGGCAACCCTTCCTCCTCCGGCCACCCTGCAATGGCACACGTAGGGGACCTGGGTAGTGGAGATGACTCAGAACAAGTGAAAAAGCGGCTAAGAACATGA 1002 45.11 MRTGKSNQEDEEYEDDELVAKREGPSSTSNANSSIGNSKDAKNNDRANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLDSHSGRDVLQDADITNKVPLPMSLEGNIHASIRSDGVLDQSLQIPISSGQATECPIANNASSQPEEMAIEGGTISISSLYSEGLLNSLTQALQNTGLDLSQASVSIQVDLGKRANKGFPFGMPIFKETGNPSSSGHPAMAHVGDLGSGDDSEQVKKRLRT 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2124719 2131045 - CmaCh05G004600.1 Cma05g00460 294578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00460 333 Gene3D - 47 119 IPR036638 GO:0046983
Cma05g00460 333 MobiDBLite consensus disorder prediction 298 333 - -
Cma05g00460 333 CDD bHLH_AtBIM_like 48 124 - -
Cma05g00460 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983
Cma05g00460 333 MobiDBLite consensus disorder prediction 1 62 - -
Cma05g00460 333 SMART finulus 55 105 IPR011598 GO:0046983
Cma05g00460 333 MobiDBLite consensus disorder prediction 23 43 - -
Cma05g00460 333 PANTHER TRANSCRIPTION FACTOR BIM2 1 333 - -
Cma05g00460 333 MobiDBLite consensus disorder prediction 44 62 - -
Cma05g00460 333 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Cma05g00460 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Cma05g00460 333 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 333 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00460 Cma-Chr5:2124719 Cma10g00277 Cma-Chr10:1225459 1.85E-75 dispersed
Cma12g00116 Cma-Chr12:481695 Cma05g00460 Cma-Chr5:2124719 2.24E-73 transposed
Cma12g00115 Cma-Chr12:479832 Cma05g00460 Cma-Chr5:2124719 2.19E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35057 PF00010 HLH 1.80E-13 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00460 - - csv:101217750 602.823