Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00467 ATGTCCTCCGCCGATCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTTAGCATCCTCGTCTTTATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA 537 62.01 MSSADPPSSSSSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2157692 2158228 + CmaCh05G004670.1 Cma05g00467 294585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00467 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 160 IPR013083 -
Cma05g00467 178 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 161 - -
Cma05g00467 178 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 17 161 - -
Cma05g00467 178 SMART ring_2 113 154 IPR001841 -
Cma05g00467 178 Pfam Ring finger domain 113 155 IPR001841 -
Cma05g00467 178 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Cma05g00467 178 SUPERFAMILY RING/U-box 112 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00467 Cma-Chr5:2157692 Cma16g00544 Cma-Chr16:2796001 1.56E-34 dispersed
Cma05g00467 Cma-Chr5:2157692 Cma04g00689 Cma-Chr4:3496318 8.29E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00467 - - cmos:111462423 305.834