Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00482 ATGGCATTACAGAACATTGGTGCCTCAAACCGTGATGATGCTTTCTATAGGTATAAGATGCCTAGGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATCAAGACTAATGTAGTTAACATGGTGGACATTGCAAAAGCCTTGGGTAGACCTGCCGCTTACACTACCAAGTACTTCGGATGTGAGCTTGGCGCGCAATCCAAGTTTGATGAGAAAACAGGGATTGCTCTTGTTAATGGAGCACATGAGACGGCGAAGTTGGCTGGTCTTCTCGAAAACTTCATCAAGAAATATGTTCAATGCTATGGTTGTGGAAACCCTGAAACTGAGATAATCATCACAAAGACGCAGATGATCAATATGAAATGTGCTGCTTGTGGATTCATATCTGATGTTGATATGAGAGATAAACTCACTACATTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGCGGGCTGAGAAGGAACGGCTTAAGGAAGGAGAGGCTGCTGATGAGGAACTGAAGAAAATAAAGAAGGATTCCTTGAAGAAGAAAAGCACTAGTGGTAATGCAAAGGAAGCTGTAACCAAAGTTCCAAGCAAGAAAAAGAGCAACGGCTCTGATGAGGATCATTCTCCAACTCGTAGCCATGCCGGTGAGAATGACCAAGCTGCTGACGACGACGACGACGACGATGTACAGTGGCAAACAGACACATCTTTGGAGGCAGCCAAGCAGCGTATTCAGGAGCAGTTGAGTGCTGTCACTGCTGATATGGTCATGCTCTCTACAACTGAAGAGACAAAGTCGTCAAAGAAGTCTCCCGAACACGAGAAGTCTGTGGTCAATGGAAGCAAGAACGGAAACAGAGTGTCTAGCCATGGTGCCCTTGTTAATGAGATCAAAGATTATTTGAAGAGAAGTCCCTCTGCTGCCGATCTTAAATCATTCTTGGAGTCACTTACTGGAACTCACCAAGAGACTGCGAATGCCTTAATTGAGGCTCTATTTGAAGGAGTTGGGAAAGGGTTCTCAAAGGAGGTAGTGAAAAAGAAGAAGTTCCTGGTTGCAGTTGCAGCAGCTCAGGAGGAGGGATCACAGATAGTTCTGTTGCGTTCCATCGAATCTTTCTGTCTCAACACGAGTCCGGAGGCGGCAAAGGAGATCGCACTGGTCCTGAAATCGTTATACGATGGAGATGTAATAGAGGAGGAATTTGTACTAGAGTGGTACCAGCAGGGACTGGCAGGAGCTAACAAGGGTAGCCAAATCTGGAAGCATGTAAAGCCGTTCATCGAGTGGCTCCAGAACGCAGAGTCTGAGACGGAAGAAGAGTAA 1347 45.29 MALQNIGASNRDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKALGRPAAYTTKYFGCELGAQSKFDEKTGIALVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMINMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEELKKIKKDSLKKKSTSGNAKEAVTKVPSKKKSNGSDEDHSPTRSHAGENDQAADDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEETKSSKKSPEHEKSVVNGSKNGNRVSSHGALVNEIKDYLKRSPSAADLKSFLESLTGTHQETANALIEALFEGVGKGFSKEVVKKKKFLVAVAAAQEEGSQIVLLRSIESFCLNTSPEAAKEIALVLKSLYDGDVIEEEFVLEWYQQGLAGANKGSQIWKHVKPFIEWLQNAESETEEE 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2273133 2274479 - CmaCh05G004820.1 Cma05g00482 294600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00482 448 CDD W2_eIF5 295 446 - -
Cma05g00482 448 Pfam eIF4-gamma/eIF5/eIF2-epsilon 370 448 IPR003307 GO:0005515
Cma05g00482 448 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Cma05g00482 448 SMART 542_3 356 444 IPR003307 GO:0005515
Cma05g00482 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 448 - -
Cma05g00482 448 MobiDBLite consensus disorder prediction 199 225 - -
Cma05g00482 448 Gene3D - 2 104 - -
Cma05g00482 448 MobiDBLite consensus disorder prediction 267 295 - -
Cma05g00482 448 MobiDBLite consensus disorder prediction 143 236 - -
Cma05g00482 448 ProSiteProfiles W2 domain profile. 287 448 IPR003307 GO:0005515
Cma05g00482 448 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Cma05g00482 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 448 IPR045196 GO:0003743|GO:0006413
Cma05g00482 448 MobiDBLite consensus disorder prediction 148 190 - -
Cma05g00482 448 Gene3D - 105 145 - -
Cma05g00482 448 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Cma05g00482 448 Gene3D - 289 448 - -
Cma05g00482 448 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Cma05g00482 448 SUPERFAMILY ARM repeat 299 442 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00482 Cma-Chr5:2273133 Cma01g00737 Cma-Chr1:3882381 1.57E-07 dispersed
Cma12g00141 Cma-Chr12:614875 Cma05g00482 Cma-Chr5:2273133 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00482 K03262 - csv:101210873 720.309