Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00488 ATGGAGCAATTTCAGAACGACGATCTTGCGTATATTGTGGATGATTATTTTGAAGTCGGTGATTTTGACGACGGACAATTTTTCTCTGATGATGACTCCCATACTGATCAGAGTACCGAGCACATAGACTCCGACTTTGAGGACGACATCGATACAAGCACGCCGAGGACGGATACCTCTGCTTTGGATGCTAGGAATGGGAAAGATATCCAGGGAATACCTTGGGAGAGGTTCACCTTTACTAGGGAGAATTATCGGGAAAATCGTTTGAGCCAGTACAAGAACTATGAGAGCCTGCCAATCTCTCGAGATGAACTGGAAAAGGTGCCTTTTCCTTCGTCAATATTCGTTGCCCTGTACTTTCTGACGTCTCTTATTTCGCGAGTGGCTGCCCTTCCACTTTCTCATCGTTATCATAATAATTTTATAATTTTTCGTCTTTCTGAACAACGGCGTGTTGCTCAAGAATGCTTGCGAGTGGAGAAGGGGAATAAGTTTTATGACTTCCAGTTCAATACAAGGCTTGTTAAATCAACAATTGTTCATTTTCAGCTAAGGAATCTCTTGTGGGCAACTTCTAAGCATGACGTATACCTTATGCAAAACTACTCAGTAATGCACTGGTCCTCGTCGCTTCGGAGAGGCAAAGAAGTACTCAATGTAGCTAAACAAATCGTTCCCACTGTGAAACGCCCTGGAGTCTCGTCACAGTCATTGTCCAGAGTGCAGATAAGTACTATGACAGTAAAGGAGAACTTAATCGTGGCGGGTGGTTTTCAAGGGGAACTAATTTGCAAGTACGTGAATAATCCTGGAGTTGCATTTTGCACCAAAATGACAACAGAAGAAAATGCAATTACAAATGCTGTTGATGTATTTCTAACTCCAGATGGTGCAACAAGGGTTGTTGCTGCAAATAATGATGCAAAAATTAGGATTTACGATGCTAAGACATTTACTTGCCTCAACGGCTTCACGTTTGGCTGGTCTGTAAATGTGATAGAGAGCCTGAAGGGGCACTTGGATTACTCTTTTGCTTCTGCATGGCATCCTGATGGACACATTTTGGCGACTGGGAACCAAGATACCACCTGCAGGCTGTGGGATATAAGGAATACGTCCAAGTCTCTAGCTGTGCTCAAGGGAAGAATGGGATCAATCAGATGTGTAAAATTCAGCTCCGATGGCAAATTCCTGTCGACTGCAGAGCCTGCAGATTTCGTCCATATCTATGAAAGTCGCACAGGTTATGAACAAGTACAAGAAATTGATCTGTTTGGGGAAATTGCTGGAATATCCTTCAGTCCCGACACGGAAGCTCTGTTTGTTGGCGTTGCTGATCGAATATACGGTAGCTTATTAGAGTTCAACAAACGACATCATAATAAGTACATAGATTCCATGTTCTAG 1410 42.98 MEQFQNDDLAYIVDDYFEVGDFDDGQFFSDDDSHTDQSTEHIDSDFEDDIDTSTPRTDTSALDARNGKDIQGIPWERFTFTRENYRENRLSQYKNYESLPISRDELEKVPFPSSIFVALYFLTSLISRVAALPLSHRYHNNFIIFRLSEQRRVAQECLRVEKGNKFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSSLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISTMTVKENLIVAGGFQGELICKYVNNPGVAFCTKMTTEENAITNAVDVFLTPDGATRVVAANNDAKIRIYDAKTFTCLNGFTFGWSVNVIESLKGHLDYSFASAWHPDGHILATGNQDTTCRLWDIRNTSKSLAVLKGRMGSIRCVKFSSDGKFLSTAEPADFVHIYESRTGYEQVQEIDLFGEIAGISFSPDTEALFVGVADRIYGSLLEFNKRHHNKYIDSMF 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2304078 2309036 + CmaCh05G004880.1 Cma05g00488 294606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00488 469 Pfam WD domain, G-beta repeat 335 369 IPR001680 GO:0005515
Cma05g00488 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Cma05g00488 469 SMART WD40_4 373 412 IPR001680 GO:0005515
Cma05g00488 469 SMART WD40_4 279 315 IPR001680 GO:0005515
Cma05g00488 469 SMART WD40_4 330 369 IPR001680 GO:0005515
Cma05g00488 469 PANTHER OS03G0386000 PROTEIN 333 469 - -
Cma05g00488 469 PANTHER OS03G0386000 PROTEIN 150 333 - -
Cma05g00488 469 PANTHER OS03G0386000 PROTEIN 1 108 - -
Cma05g00488 469 MobiDBLite consensus disorder prediction 28 61 - -
Cma05g00488 469 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 150 333 - -
Cma05g00488 469 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 333 469 - -
Cma05g00488 469 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 108 - -
Cma05g00488 469 ProSitePatterns Trp-Asp (WD) repeats signature. 356 370 IPR019775 -
Cma05g00488 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 372 - -
Cma05g00488 469 Gene3D - 208 468 IPR015943 GO:0005515
Cma05g00488 469 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 243 447 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00488 - - - jre:108997195 619.772
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00488 Cma12g00147 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00488 Cma-Chr5:2304078 Cma09g00653 Cma-Chr9:3104256 0 dispersed
Cma12g00147 Cma-Chr12:636986 Cma05g00488 Cma-Chr5:2304078 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00488 Cma_Chr05 FPKM 48.861763 51.909481 32.698376 31.627392 19.541983 21.851116 20.857435 54.042351 50.357452 53.911736