Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00489 ATGAGGCTGGACCCACAACGTAGAAACCGACACCTGCCAGTGAACTCGAAGGACACGTGTCAAGAAGTAATTTTGGGGCCGGACTCTTATAAAACCCAAGGGTTGCCTGAGATCGTGAATCAGAGTGAGACCGAGCGAAATTCGAGAGAAATTTCACTGACTGTGTTCTTGTTTTCGATCTTCTTCTTCTTCAATCCCCCCTCTAATGATCCGAAAGCAAACTTGAGAAAAAAGGTTTGTCGAAAGCGCAGAGAAGTTATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGATTTTCAGTCAGATCCAGTTGGTGGTGAATTAATGGAAGCGCTTGAGCCTTTTATGAAAGCTGCTTCCTCTTCATTTTCTATTCCCGATTTCTCTTTTTCATCTTCGATCCAAACAGAATCCACTTCTTACTCCTCCGATTGTTCTCCTCCGATGATCCATTTGTTTTCCAGTCAAGACTTCCATGGATTAGAGCAATCAGCCTCCATCGGACTTAATTACTTGACGCCCTTTCAGATCCAACAGATTCAATCTCAGTTTGCTCTCCAGACACTGATCCCGCCAGTTTGGGGACAGATTAACAACCAGGTAGTGAGAAATCAGAGGAACGGCGGGAATTTGTTAGCACCGAAGGGGATTTCCATGAAGCAAGTTGGATCTCCACCGAAATCGACGAAGCTTTATCGAGGCGTAAGGCAAAGGCATTGGGGAAAATGGGTGGCCGAGATCCGTCTACCGAGGAACCGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCCTACGATAAAGCCGCTTACAAGCTTCGAGGCGACTTTGCTAGGCTCAATTTCCCTCATCTCAAGCACCATGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTTCACTCCGCCGTCGACGCGAAGCTTGAAGCCATCTGCCAAACCTTGGCGGAGTCGCAGAAACAGGGGAAATCAAACCGAGCCTCATCGAAGAAATCGAAATCATCGAGTTCTTCAACAGTCGAATCAGAGTGTGAGACGCCGACGGTGATTGATCCCGACGAGAATCTGAGAACAGAGGATGCCAGATCGAGTGGATCGGAGATCTGTTGCAAGGTGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAACGACGAGTCGGCAGGGTCTTCGCCTTTGTCGGATCTGACATTCCCCGATCCGACGGATTCACCGTGGGAACCGCCGTCGGAAAGCAGTATGCTGCAGAAATATCCGTCGGAAATCGATTGGGCTTCGATCTTCACATCTTGA 1311 49.73 MRLDPQRRNRHLPVNSKDTCQEVILGPDSYKTQGLPEIVNQSETERNSREISLTVFLFSIFFFFNPPSNDPKANLRKKVCRKRREVMAALMDLYGCRDFQSDPVGGELMEALEPFMKAASSSFSIPDFSFSSSIQTESTSYSSDCSPPMIHLFSSQDFHGLEQSASIGLNYLTPFQIQQIQSQFALQTLIPPVWGQINNQVVRNQRNGGNLLAPKGISMKQVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSNRASSKKSKSSSSSTVESECETPTVIDPDENLRTEDARSSGSEICCKVENSSSPVSAENDESAGSSPLSDLTFPDPTDSPWEPPSESSMLQKYPSEIDWASIFTS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2317976 2319770 + CmaCh05G004890.1 Cma05g00489 294607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00489 436 MobiDBLite consensus disorder prediction 375 404 - -
Cma05g00489 436 CDD AP2 230 290 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 MobiDBLite consensus disorder prediction 357 373 - -
Cma05g00489 436 Pfam AP2 domain 232 280 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 ProSiteProfiles AP2/ERF domain profile. 231 288 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 PRINTS Ethylene responsive element binding protein signature 254 270 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 SMART rav1_2 231 294 IPR001471 GO:0003700|GO:0006355
Cma05g00489 436 MobiDBLite consensus disorder prediction 324 424 - -
Cma05g00489 436 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 90 433 - -
Cma05g00489 436 MobiDBLite consensus disorder prediction 324 352 - -
Cma05g00489 436 SUPERFAMILY DNA-binding domain 231 289 IPR016177 GO:0003677
Cma05g00489 436 Gene3D AP2/ERF domain 231 289 IPR036955 GO:0003700|GO:0006355
Cma05g00489 436 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 90 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00489 K09286 EREBP; EREBP-like factor - csv:101222833 518.079
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00489 Cma12g00148 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01414 Cma-Chr1:9979547 Cma05g00489 Cma-Chr5:2317976 1.12E-98 dispersed
Cma05g00489 Cma-Chr5:2317976 Cma09g00654 Cma-Chr9:3113076 9.13E-104 dispersed
Cma15g01277 Cma-Chr15:8091619 Cma05g00489 Cma-Chr5:2317976 1.82E-34 dispersed
Cma07g00534 Cma-Chr7:2311762 Cma05g00489 Cma-Chr5:2317976 1.93E-80 transposed
Cma08g01023 Cma-Chr8:6400594 Cma05g00489 Cma-Chr5:2317976 6.24E-33 transposed
Cma12g00148 Cma-Chr12:648339 Cma05g00489 Cma-Chr5:2317976 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001774 1 2 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 3 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35059 PF00847 AP2 6.30E-15 CL0081 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00489 Cma_Chr05 FPKM 503.853943 553.596619 93.251312 91.270836 92.389084 81.345863 93.00116 70.77993 66.762634 76.346642