Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00499 ATGTCGCCGTCTGCCGTCGGATGCTTCGTTGCCGACGGCGGATGTGCATGGAATGGGGATGTCAGAGAAGTTGGCAACTGTAAATCCGGTGATTCCTATTGTGATCATTGTGGCTGTGGTTCCGCGGATTTATCTTCTTTGCCGGTGTTTTCTTGGTCTTCCTCTTCTCTATGGTCTGATTCGACGCGGTTGAGAGAGTCGGGAAAGCTATGGCGGATCCTTGTTGCTTCTGCTAAAGGCTTCACAATTGGAGCTGGTCTCAAAGGTGGACTCTCTCTCTTCTCTGTCCTCGCTGGATTGAAGCGGAGAAAGGCCTTGGCCTCCCTCGGGAAGAAAGGAGTGATTACGAATCGAGATGCGATTTCCATGGCTTTGAAGGAGACTTTGAGGTACGGCCTCTTTCTTGGAACCTTTGCTGGTGCATTCGTTTCCATCGATGAGATCATAGGCAATCTGGCAGGCCACCGGAGGACTGCAAGATGGAGGGCTCTAGTAGCGGGAGCATTAGCTGGGCCATCGATGCTTCTGACTGGATTGAATACGCAACATAAGACCTTAGCTATCTACATTTTTACGCGTGCTGCGGTCTTGGCAACGCGCTGTGGAATTGAAAGCAAGCGGCTCGGGCATATTTGTAAGCCTCTCACATGGTCATATGGTGACATCTTCCTCATGTGCCTCTCCTCTTCGCAAATCTTGTCTGCTTATGTGTTAAAGCAAGATAGCTTACCACCATCGTTTAGGTCCTTTCTCAATACTCATGGTGGAAAGGATACTGTAATCTTGGAAGGTTTAAAGAGCTTTATATTAGGCATGCCTTCTTCTAATAAATTTAATGCGATAGAAAAGTACTACCAGACTAAGGGTGCTCACGTCAAACTAGATCCGGGAATGAAGACTCCATGCACGATTATACATGGAAATCAATCATGTGGTGGCCATTTTCTTTCCTTTATCATTCAAGGATATAAAAGAGCGTTGCCAGTTTATCTCCCTGTGTATCTTATCCCAGCCCTAATAGTTCATCGTCAAGGTCTCATGAATAGGCCATACGAAATTTTAGCAAGGGGGCTTCTTGGAACTGCTAGATCAAGTCTGTTCCTTTCTGTATATTGTGCGTCTGCTTGGATATGGACATGCCTGACCGCAAGGACTTTCAAGAAAATAAACGTTCCATTGGTTGCTGTGGCAACGTTCTTAACGGGTTTGGCTCTGGCTATTGAGAAGAAGAGCAGGAGGATTGAAATCTCACTCTATTGCCTTGCAAGAGGTATCGAGAGCTTCTTCAGCTGCATGACAGATTTGGGATACTTACCACAATCGTTGAATTTCAAGAGAGCGGATGTGATAGTTTTCAGCTTATCAACCTCCATTATAATGCACTGCTATGCTCAGGAAAGGGAGGTATTTCGATCCAAGTATTTGAACGTGCTTGATTGGGTTTTTGGTGTGCCCCCACCCCCCTGTGAAACACCACGCTGCAAGAATGGCAAGCAAGATTAA 1503 46.31 MSPSAVGCFVADGGCAWNGDVREVGNCKSGDSYCDHCGCGSADLSSLPVFSWSSSSLWSDSTRLRESGKLWRILVASAKGFTIGAGLKGGLSLFSVLAGLKRRKALASLGKKGVITNRDAISMALKETLRYGLFLGTFAGAFVSIDEIIGNLAGHRRTARWRALVAGALAGPSMLLTGLNTQHKTLAIYIFTRAAVLATRCGIESKRLGHICKPLTWSYGDIFLMCLSSSQILSAYVLKQDSLPPSFRSFLNTHGGKDTVILEGLKSFILGMPSSNKFNAIEKYYQTKGAHVKLDPGMKTPCTIIHGNQSCGGHFLSFIIQGYKRALPVYLPVYLIPALIVHRQGLMNRPYEILARGLLGTARSSLFLSVYCASAWIWTCLTARTFKKINVPLVAVATFLTGLALAIEKKSRRIEISLYCLARGIESFFSCMTDLGYLPQSLNFKRADVIVFSLSTSIIMHCYAQEREVFRSKYLNVLDWVFGVPPPPCETPRCKNGKQD 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2366127 2371078 + CmaCh05G004990.1 Cma05g00499 294617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00499 500 PANTHER UNCHARACTERIZED 1 489 IPR026749 -
Cma05g00499 500 PANTHER BNAANNG02190D PROTEIN 1 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00499 - - - csv:101202879 895.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00499 Cma12g00157 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00995 Cma-Chr2:5915553 Cma05g00499 Cma-Chr5:2366127 6.61E-36 dispersed
Cma05g00499 Cma-Chr5:2366127 Cma15g01370 Cma-Chr15:8572297 7.98E-33 dispersed
Cma12g00157 Cma-Chr12:693072 Cma05g00499 Cma-Chr5:2366127 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g407 . . Bda01g00884 . . . . . Cmo05g00522 . . . . Car12g00145 . . Cpe07g00133 Bhi04g00756 . . . . . . Cla08g01107 Cam08g1560 Cec08g1134 Cco08g1260 Clacu08g1263 . Cre08g1044 Cone4ag1339 Cone7ag1591 Cone17ag1219 Cone20ag0505 . . . Cme03g01866 . Blo18g00132 . . Bpe02g01120 . Bma01g01404 . . . . Cma12g00157 Cma05g00499 Car05g00447 . . . . . . . . . . . . . . . . . Lsi08g00963 Csa02g02148 Chy03g01370 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007812 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00499 Cma_Chr05 FPKM 1.476328 2.153075 1.658186 1.98708 5.390213 5.409558 5.813734 8.577094 9.376557 9.508264