Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00501 ATGCTCCATTTCTTTTTTTTTTTTGTGATTATGAGGACCGGGTTCTGGGTGATGGGGATTGTTGTCTTGGCCATGATGTTGGAGAGCCAAGCGTCTTCCGCCCACTCGGTTAGGGTTTCGCATTCAGGTCCCTCGTGTCCTGTTGAATCTTTTCTGGATACGATCTTCCCTTTCAAGGATTGGAACTCGATTTGCCCCTTTCACGGTGAAGATGGGCACTCAGAATTTATTGGTGTTTCTGAGGGAGATGAAGCCTTGTTACAAATGGCAATGAATATGGTTCATAAAAACCGTTACGACTACGTTGCAGTACTCTTCTACGCATCTTGGTGCCCGTTCTCCAAGTCTTTTAGGCCGAGATTTTCAATACTATCCACTTTATATCCTTCTATCCCGCATTTTGCAATCCAAGACTCAGCTATCAGGCCAAGCATACTCTCTAAGTATGGGGTTCATGGTTTTCCTACACTTTTCCTTTTAAATTCGACAATGCGTGCTCGCTACTATGGTTCCCGAACTCTCCCTTCTCTTATTGGATTCTATAATGATGTTACTGGCATTCAGACTGCATCACTGGATCAAATATCACCAGATATAATCGGACAAGTGAGGAATGAGGAGAAGCATGATGACAACTATGAGCAGGAAAATTGCCCATTCTCGTGGGCAAGGTCTCCAGAAAATTTACTTCGGGAAGAGACGTACTTGGCTCTGGCTACTGCATTTGTGCTTTTGAGATTGATATATATTTTGTTTCCAACCCTTTTAGTCTACGCTCGATACGTTTGGCAAAGGCACGTTAGAAACCTGAGATTTGGAACCTTGTGGGAACGACCTTTGACGTGCCTGAAAGGAGCAATTCAGTTATTCAGTCATTTCAAAGATCCTTGCAAGAGAAGCAATTTGCAAGGAGGGGCCATGAATGCCAGGATATGGGCCAAGTCTTTTGCCACAGTTTCAATAGAAAAGGCAGCCTCGAGTAGTTTTTGGATTCAACATAATGGGAACAAAGTAACCAACAGACTCCTCCGCCCCTTCGTGTGTAACTTCTTGCAAATGCCACAACCATCCATGTCCCCCACATGGACCGTCACCAACGCCATTGTCTTTTGGTCTCATTGCCTCCTATCACGCGCCCGACTCAACGGTGCCGCAATCCAACGGCTCTCCTCCTCCATCACGAGAATCAAGAGCCTTCACCAAGTCCCAAACCCAATCCTTGCCGTCCACAACCCCCAGGATTCTCCACTACACTCCATCCACGAACTACAGTATATCAGGAAGCGGTTGTGTAGGAAGAGGAACGGGAAGAATCAAAAGCAAAACAGCCTCAAACGCATTTTTCGGATCGAGAAGTTCGTCAGAGCTCCGGCGATGGAGAAGGAGAGGGAGAAGCTTGTTTACTTGGCCAGACTTGCAGAACAAGCAGAGAGATATGATGAAATGGTGGAAATGATGAAGAGCGTCGCAAAGTTGGACGTAGAACTTACTGTGGAGGAGAGAAACCTGGTCTCTGTGGGATATAAGAACGTTATTGGGGCAAGAAGAGCCTCGTGGCGTATTTTATCTTCTATTGAACAAAAGGAGGAAGGAAAGAAGAATGAGGCTAATGTGAAGAGGGTCAAGGAGTACAGGCAGAGGGTTGAAGACGAACTGGCAAGAATTTGCCAGGACATCTTATCAGTTGTTGACAAGCATCTCATTCCATCTTCATCCTCTGGCGAATCCAATTCTGCATTGAGTATGTTTTATGCATCCATCCTGGTAAAGAAAGGGGATTATAATCGATACTTAGCAGAGTTTAAATCTGGCCAAGAACGCGAAGAAGCTGCAGACCAGTCGATGAAGGCCTATGAGTCTGCCTCAAGCATTGCAAGCTCTGATCTTCCTCCAACACATCCAATCAGACTTGGCTTGGCGCTTAACTATTCTGTTTTCTACTATGAGATATTAAATTCCCCAGAGAGGGCATGCCACCTTGCTAAACAAGCTTTTGATGATGCCATAGCTGAACTCGATGGCCTCAATGAAGAATCCTACAAGGATAGTACCCTCATCATGCAATTGCTGAGGGATAATCTCACGTTATGGACCTCAGATCTCCCAGATGAGGGAGGTAGATTTCCATGA 2130 45.45 MLHFFFFFVIMRTGFWVMGIVVLAMMLESQASSAHSVRVSHSGPSCPVESFLDTIFPFKDWNSICPFHGEDGHSEFIGVSEGDEALLQMAMNMVHKNRYDYVAVLFYASWCPFSKSFRPRFSILSTLYPSIPHFAIQDSAIRPSILSKYGVHGFPTLFLLNSTMRARYYGSRTLPSLIGFYNDVTGIQTASLDQISPDIIGQVRNEEKHDDNYEQENCPFSWARSPENLLREETYLALATAFVLLRLIYILFPTLLVYARYVWQRHVRNLRFGTLWERPLTCLKGAIQLFSHFKDPCKRSNLQGGAMNARIWAKSFATVSIEKAASSSFWIQHNGNKVTNRLLRPFVCNFLQMPQPSMSPTWTVTNAIVFWSHCLLSRARLNGAAIQRLSSSITRIKSLHQVPNPILAVHNPQDSPLHSIHELQYIRKRLCRKRNGKNQKQNSLKRIFRIEKFVRAPAMEKEREKLVYLARLAEQAERYDEMVEMMKSVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEGKKNEANVKRVKEYRQRVEDELARICQDILSVVDKHLIPSSSSGESNSALSMFYASILVKKGDYNRYLAEFKSGQEREEAADQSMKAYESASSIASSDLPPTHPIRLGLALNYSVFYYEILNSPERACHLAKQAFDDAIAELDGLNEESYKDSTLIMQLLRDNLTLWTSDLPDEGGRFP 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2374954 2380674 - CmaCh05G005010.1 Cma05g00501 294619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00501 709 Gene3D - 443 706 IPR036815 -
Cma05g00501 709 ProSitePatterns 14-3-3 proteins signature 1. 501 511 IPR023409 -
Cma05g00501 709 CDD PDI_a_ERp44_like 82 181 - -
Cma05g00501 709 PANTHER 14-3-3 PROTEIN 460 705 IPR000308 -
Cma05g00501 709 SUPERFAMILY Thioredoxin-like 98 186 IPR036249 -
Cma05g00501 709 PRINTS 14-3-3 protein zeta signature 544 568 IPR000308 -
Cma05g00501 709 PRINTS 14-3-3 protein zeta signature 495 524 IPR000308 -
Cma05g00501 709 PRINTS 14-3-3 protein zeta signature 617 643 IPR000308 -
Cma05g00501 709 PRINTS 14-3-3 protein zeta signature 644 670 IPR000308 -
Cma05g00501 709 PRINTS 14-3-3 protein zeta signature 671 700 IPR000308 -
Cma05g00501 709 SUPERFAMILY 14-3-3 protein 462 700 IPR036815 -
Cma05g00501 709 Pfam Thioredoxin 99 178 IPR013766 -
Cma05g00501 709 SMART 1433_4 463 708 IPR023410 -
Cma05g00501 709 Pfam 14-3-3 protein 469 698 IPR023410 -
Cma05g00501 709 ProSitePatterns 14-3-3 proteins signature 2. 680 699 IPR023409 -
Cma05g00501 709 Gene3D Glutaredoxin 90 219 - -
Cma05g00501 709 ProSiteProfiles Thioredoxin domain profile. 79 186 IPR013766 -
Cma05g00501 709 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 460 705 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01607 Cma05g00501 CCT
Cma01g01607 Cma05g00501 ECH
Cma05g00501 Cma12g00101 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00501 Cma-Chr5:2374954 Cma11g01888 Cma-Chr11:12509581 7.50E-134 dispersed
Cma07g01162 Cma-Chr7:6371365 Cma05g00501 Cma-Chr5:2374954 6.22E-19 dispersed
Cma01g01607 Cma-Chr1:11072379 Cma05g00501 Cma-Chr5:2374954 8.02E-123 wgd
Cma12g00159 Cma-Chr12:703722 Cma05g00501 Cma-Chr5:2374954 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00501 K06630 - cmax:111492185 657.907