Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00503 ATGTTGAAGCCCTTGCACCGAGGTGTTTCTGGGACAAGGATCTGTGAGGGTAGCCATGACTTAAATGGAACTGAGAAGGGAGATTTTGATGTGAAGGGTTCTTCATATGAAAGTGATGAAATGTTTAGGTTCCTGTCTGATTCGTTCGTATTGGGAACTCTAAGAAATCAGCACAAGTTAGCTAAGCAAATGTTGAACTTCAGCATACCGTTGATTGTTCTTGTAATCTTCTTTGGATTGTTTTGGTGGTCTGTATCTATTTCGACGTCATCCAGACTTCACGCAGCTCGTAGTTACGATAAAATTCAAGAACAGGTTGTTTTATACCTTTCTGAGATTGGGGAGCTTGCTCTTGGTCCTTCAAGGTTAAGAGAATTGGAGTTTTGTTCCCAAGATTTTGAAAACCATGTTCCTTGTTTTAGTGCTCGAGAAAACCCTGACTCGGGATCTGCCGATCGTTCTTGTGAGGTAGAACCAAAGCAAAATTGCATTGTACCACCTCCTGTGAAGTACAGGGTTCCTCTTAGATGGCCCATTGGAAGAGATGTTATCTGGTTTGCGAACGTAAAAATGACTGCCGACGAAGTCCTCTCTTCAGGAAGCATGACCAAGAGGATGATGATGATGGAGGAAGAGCAGATATCATTCCGTTCTGATTCTTCGATGTTTGAAGGGATAGAAGATTACTCCCACCAAATTGCAGGGATGATTGGGCTGAGAAATGTATCTAATTTCATACAAGCTGGAATAAGAACTATTCTCGATATTGGATGTGGTTATGGTAGCTTTGGAGCTCATCTCTTTTCAAAACAGCTTTTGACCATGTGCATAGCAAATTATGAAACATCTGGCAGTCAAGTTCAACTAACGCTCGAGCGAGGACTTCCTGCAATGCTAAGTTCTTTTGCTTCAAAACAGTTGCCATATCCATCTTTCTCCTTCGATATGGTTCATTGTGCGCAATGTGGTATCGATTGGGACCTAAAAGATGGTATCTATTTAACTGAAGTCGACAGAGTCTTAAGGCCCGGGGGATATTTTGTTTGGATGTCACCAATTGCCGATGCTCAGAGCTTCCTCCACAACAAAACCAATCTGAAAAAGTGGAACGCTGTTCGTGATTTTACCAAGAGCCTCTGCTGGGAAATGCTGTCCCAACTAGACAAAACTGTGACAAGTTATCCTGATCGTTTGCTATACGCTGCTTGCAATTCTAGGAAGCCTAGTTCGGGTCCTCCACTATGTAATAAAGGCCATTATGTCGAATCTCCATATTATCGTCCTCTCGAAAACTGCATTGGTGGAACAAAAAGCTCTAGGTGGTTTCCTGTTGAACAGAGGACATGGCCTTCTAGAGCTAACTTAAACAAGAGTAAACTTGCAGTTTATGGAGTACAATGGGAAGATTTTGCTGAAGATTCCATGAAATGGAAAATGGCCGTCAATGATTATTGGCCTCTTATGTCACCACTGATATTCTCAGATCACCCGAAGAGACCTGGCGAGGACGATCCCACGCCCCCATATAACATGCTGCGTAACGTGCTTGACATGAATGCTCAGTTTGGAGGATTTAATTCAGCCCTGTTGGAATCTGGCAAGGATGTATGGGTCATGAATGCAGTTCCAACAACTGGATCTAATCACCTTCCATTGATCGTCGACAGAGGCTTTCTTGGTGTATTACACGATTGGTGTGAAGCATTCCCTACATATCCTAGAACATACGATATGGTGCACGCAGACAGTATTTTATCCCTTGAAGCTGTACGACATCGTTGCAGTATGCTTGATCTGTTATCCGAGATCGATCGGTTACTTCGTCCTGAGGGTTGGGTGATAATACACGACGCCACAAACCTCATCGAATCAGCAAGAAGGTTAACGACACAGCTGAAATGGGATGCTCGAGTTATCGAGAGCGATAGCAACATGGACAAGAGGCTGCTCCTGTTAATTAACGGACATTGCAAGAGGCCAACAACATCGACCATTTTCTTCACTTCCAGAATTACAATTCCTCTTCCATGGCCGCCGCCATCCCTCCATAAATCCCTTCCCATTTGTCTCATTCATGAAGAACATCACCGGCCGCTTCCCTCTCCGCCGGACTCCGCCTTCCTCCTCCTCTTAATCGTCCCGGCGGTGCCCATGGCTGAAAATTTCTCCAACACTCACCCGCCGCCCTTCGGCGACACCACCTGGACTAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTTTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCATGATAAGAACACCGGCAAATCCAAAGGCTACGGATTCGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGGGCTCGTCCTCCTCCGCCGCCGCCGCTGCTACTTGGAGGACGAAATCAAATTGGGAATCTTCATACTACGAGTGCAGCTGCTGCGTCTTTCGGTGGGTTACTGACGCCGTATCCTCCGCCGCCTTCGTCGCCGCCGCCGCCGCAGATCATGTTCCCAGCGTATAGATACCGATCCTACGCCCCAAATTACACACTTCCTTATCATCAACCTCAATTGTACCAACAGTCACCATGTTCTTCTTCTTATGGCTATGCCTATGGCTATCCTTCTTCTTCTTCACAGTCACCAAGGGTAGCATTTCCCGTACATGGCTACGGGCATGGGCATGCCCATGGCCCTTCTTCTCCATTGTCATCCTCACCCTCCTACTTCCCTTACTATACAAATTACACCCACATGCAACAACCGTTATTCTACGCTCACATGCACCCGATCGCCACTCCCATTACTGGTAGACAGAGTCCAACAGAGACAGAAGGAGGGGCCAGTGGCTCTAATACCCCAAATACTTGTTAG 2961 46.27 MLKPLHRGVSGTRICEGSHDLNGTEKGDFDVKGSSYESDEMFRFLSDSFVLGTLRNQHKLAKQMLNFSIPLIVLVIFFGLFWWSVSISTSSRLHAARSYDKIQEQVVLYLSEIGELALGPSRLRELEFCSQDFENHVPCFSARENPDSGSADRSCEVEPKQNCIVPPPVKYRVPLRWPIGRDVIWFANVKMTADEVLSSGSMTKRMMMMEEEQISFRSDSSMFEGIEDYSHQIAGMIGLRNVSNFIQAGIRTILDIGCGYGSFGAHLFSKQLLTMCIANYETSGSQVQLTLERGLPAMLSSFASKQLPYPSFSFDMVHCAQCGIDWDLKDGIYLTEVDRVLRPGGYFVWMSPIADAQSFLHNKTNLKKWNAVRDFTKSLCWEMLSQLDKTVTSYPDRLLYAACNSRKPSSGPPLCNKGHYVESPYYRPLENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVYGVQWEDFAEDSMKWKMAVNDYWPLMSPLIFSDHPKRPGEDDPTPPYNMLRNVLDMNAQFGGFNSALLESGKDVWVMNAVPTTGSNHLPLIVDRGFLGVLHDWCEAFPTYPRTYDMVHADSILSLEAVRHRCSMLDLLSEIDRLLRPEGWVIIHDATNLIESARRLTTQLKWDARVIESDSNMDKRLLLLINGHCKRPTTSTIFFTSRITIPLPWPPPSLHKSLPICLIHEEHHRPLPSPPDSAFLLLLIVPAVPMAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLHTTSAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYHQPQLYQQSPCSSSYGYAYGYPSSSSQSPRVAFPVHGYGHGHAHGPSSPLSSSPSYFPYYTNYTHMQQPLFYAHMHPIATPITGRQSPTETEGGASGSNTPNTC 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2388186 2396781 + CmaCh05G005030.1 Cma05g00503 294621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00503 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 736 813 IPR000504 GO:0003723
Cma05g00503 986 Gene3D - 716 819 IPR012677 -
Cma05g00503 986 PANTHER PECTIN METHYLTRANSFERASE QUA2-RELATED 52 653 - -
Cma05g00503 986 MobiDBLite consensus disorder prediction 964 986 - -
Cma05g00503 986 CDD RRM_RBM24_RBM38_like 736 811 - -
Cma05g00503 986 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 514 635 IPR029063 -
Cma05g00503 986 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 52 653 IPR004159 GO:0008168
Cma05g00503 986 SUPERFAMILY RNA-binding domain, RBD 724 821 IPR035979 GO:0003676
Cma05g00503 986 Gene3D Vaccinia Virus protein VP39 217 402 IPR029063 -
Cma05g00503 986 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 247 355 IPR029063 -
Cma05g00503 986 SMART rrm1_1 737 809 IPR000504 GO:0003723
Cma05g00503 986 MobiDBLite consensus disorder prediction 963 986 - -
Cma05g00503 986 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 738 796 IPR000504 GO:0003723
Cma05g00503 986 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 150 650 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00503 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - mnt:21395921 900.197
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00503 Cma09g00563 CCT
Cma01g01611 Cma05g00503 CCT
Cma05g00503 Cma12g00162 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00503 Cma-Chr5:2388186 Cma18g01112 Cma-Chr18:9060991 0 dispersed
Cma09g00563 Cma-Chr9:2554907 Cma05g00503 Cma-Chr5:2388186 1.45E-52 dispersed
Cma12g00162 Cma-Chr12:722422 Cma05g00503 Cma-Chr5:2388186 7.18E-70 dispersed
Cma12g00695 Cma-Chr12:3766593 Cma05g00503 Cma-Chr5:2388186 1.12E-44 dispersed
Cma01g01610 Cma-Chr1:11083181 Cma05g00503 Cma-Chr5:2388186 0 wgd
Cma12g00161 Cma-Chr12:718348 Cma05g00503 Cma-Chr5:2388186 3.71E-08 wgd
Cma05g00503 Cma-Chr5:2388186 Cma09g00561 Cma-Chr9:2542882 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g418 . . . Bda03g00488 Bpe02g00112 Bpe04g00442 . . Cmo05g00529 Cmo12g00125 Cma01g01611 Cma09g00563 Car01g01229 . Sed04g0147 Cpe06g00428 . Bhi04g00769 Tan02g2400 Cmetu03g0823 . Hepe10g0491 . Lcy13g1555 Cla08g01115 Cam08g1571 Cec08g1141 Cco08g1268 Clacu08g1272 . Cre08g1053 Cone4ag1331 Cone7ag1272 . . Lsi04g02239 Csa03g04450 Chy04g00250 . . . Bda11g00769 . . . . . Sed05g1598 Cmo01g01657 Cmo09g00552 Cma12g00162 Cma05g00503 Car05g00452 Car09g00493 Cpe11g00442 Cpe02g00369 Bhi09g02442 Tan01g3793 Cmetu04g1561 . Hepe01g2132 Mch11g0669 . Cla11g01387 Cam11g1444 Cec11g1470 Cco11g1466 Clacu11g1601 Cmu11g1420 Cre11g1840 Lsi08g00971 Csa02g02155 Chy03g01362 Cme04g00280
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002427 4 2 2 4 4 0 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 1 1 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00503 Cma_Chr05 FPKM 18.176218 19.391047 4.502147 3.940521 4.967276 5.065259 5.137295 5.659938 5.893111 5.334305