Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00504 ATGGCGTCTTTTTCCTCTGCATCAATGATTCCCTTCCTCTTTATAATCTCCTTGTTCCAAATCTCCTCCGCATCCAGGGTGCTAAACGACGTCGTTCAGGATCAGATGCTCAAATACCACAACGGCGTTCTTCTCTCCGGCAAAATCAGTGTCAATCTCATTTGGTATGGAAATTTCAAGCCATCCCAGAAGGCGATCGTCTCCGATTTTGTCAACTCCCTGTCGTACTCCCGGCCTCAGGTCAGCGAGCCGTCGGTCACCACATGGTGGAAGATTACAGACAAGTATTACGCAATGTCTTCTAAGAAGAAATCAACTCCTCTGTTTTTGAGCTCTGGCCGGCAAATTCTCGATGAGAATTACTCGTTGGGGAAATCGCTCACCAACGAGCAAATCGTTCAATTGGCTTCAATGGGTGACCGGAAAAACGCGATTAATGTCGTTTTGACGGCCTCTGATGTCAACGTCGATGGGTTCTGTATGAGTCGATGTGGGACTCACGGCTCTGCATCCCACGGCAGCGCTAAGGGTAAAAATTATAAGTTTGCATACATTTGGGTTGGGAATTCCGAGACCCAATGTCCAGGGCAGTGCGCTTGGCCATTTCACCAGCCGATGTACGGACCACAATCGCCGCCGTTGATTGCGCCGAACGGCGATGTGGGGATGGACGGTGTTGTTATTAACCTTGCAAGTCTTTTAGCTGGGACTGTCACTAACCCGTTTGGGAACGGCTACTTTCAAGGCCCGGCGGAAGCTCCATTGGAGGCGGCGTCGGCATGTACCGGCGTTTATGGGAAAGGGGCTTATCCTGGTTACGCCGGGGAATTGTTGACGGACTCCATTACCGGTGGGAGCTATAATGCTAATGGCGCTAATGGAAGGAAGTACTTGCTTCCGGCTTTGTATGATCCTTCCACGGCGGCTTGCTCGACGTTGAAGTCGAGAGCCACCTTCTGTTTCGCTTCACCAGTTGATCTGACTGACCATCGCCAATCGGATTCAACCTCACTTTCTGTAGCAATGGAACAACAGCAGTGTCATCAAACCCTTTTATCGCCGGACTCTTCGTGCCCACCGGCGCCATCTTCTTCTTCTTCCTCCTCCGCTCATGCTGATTCTACTGCGCCATGTGGAACCTGCCGCAAATGCGGCGGTCCTACCACCTTTGCTCCGCCGCCTCCTTCCAGGTCGTCGGAAGTTTCACCGCCTCCAAACTATCGACCTATTAGAGCTCCGGCTGTCAATCTCCCTCCGAATGAACAGTCTCGACAAGCCATAATTCTCTCTCCGGTTCCTCACTCGGAGAAGGTACTTCCCGTTTCGCCTCCTTTTCTTTTTCAAGCTCCTTCTAAGAAAATCCAATCGCCTGACGATATCCGTAGCTTTAACGATTCTGATTCCGGCAAGAATTTCCTAGGCTTTATTGTCGCCCTCTCTGAATCCATGCGTGGCCACAAAATATCTGATCCTTGCCATCAATCGGACACCGTGAATATCATTATTTCAATGCTCTGCACTTTGATTGATTGGGTCGATGAAATTCCTCCCACGGAGCAAGCAGCTCGATATGGCAATATTTCGTATCGAACTTGGCACTCTCGCTTGGTCGAAAACAGCGACGATTTCATGTTACAGTTTCTTCCCGACGATAAGAAATCCGCCACTGTTGAATTAGTACCGTATTTCACTGATAGCTTCGGAAATTCGAGCCGTATCGATTACGGCACGGGCCACGAAACTAATTTCGCTGCCTGGTTGTATTGCATGGCGAGGTTGGGGGTTATTAAAGAAGAAGATTATCACGCTGTTGTTGCTAGAGTGTTCGTCAAGTACCTGGAATTAATGAGAAAGTTGCAATTGGTTTATTGTTTGGAGCCGGCGGGATCGCACGGGGTTTGGGGTCTTGACGACTACCACTTTTTACCTTTCATTTTCGGGTCCTCTCAGTTGATTGACCATAAATATATGAAACCGAAATCCATTCACAATCCGGATATCTTGGAAAACTTTTCTGCTGAGTATCTCTATCTCTCATGTATTGCTTTCGTGAAGAAAGTGAAGAAGGGTCTGTTTGCGGAGCACTCTCCTTTGCTGGATGATATCAGTGGGGTTCCTGCTTGGAAGAAGGTGAACAGTGGGTTGCTCAAAATGTATAAAGCGGAGGTGTTGGAGAAAGTTCCTATCATGCAGCATTTTCTCTTCGGATCGCTCATCAAATGGTATGACTCTCTGGTGTATTCTCTTCATGTTTTTACTACATTGATTTCTGTTTTGTTTTCCCAACTTTAA 2292 48.12 MASFSSASMIPFLFIISLFQISSASRVLNDVVQDQMLKYHNGVLLSGKISVNLIWYGNFKPSQKAIVSDFVNSLSYSRPQVSEPSVTTWWKITDKYYAMSSKKKSTPLFLSSGRQILDENYSLGKSLTNEQIVQLASMGDRKNAINVVLTASDVNVDGFCMSRCGTHGSASHGSAKGKNYKFAYIWVGNSETQCPGQCAWPFHQPMYGPQSPPLIAPNGDVGMDGVVINLASLLAGTVTNPFGNGYFQGPAEAPLEAASACTGVYGKGAYPGYAGELLTDSITGGSYNANGANGRKYLLPALYDPSTAACSTLKSRATFCFASPVDLTDHRQSDSTSLSVAMEQQQCHQTLLSPDSSCPPAPSSSSSSSAHADSTAPCGTCRKCGGPTTFAPPPPSRSSEVSPPPNYRPIRAPAVNLPPNEQSRQAIILSPVPHSEKVLPVSPPFLFQAPSKKIQSPDDIRSFNDSDSGKNFLGFIVALSESMRGHKISDPCHQSDTVNIIISMLCTLIDWVDEIPPTEQAARYGNISYRTWHSRLVENSDDFMLQFLPDDKKSATVELVPYFTDSFGNSSRIDYGTGHETNFAAWLYCMARLGVIKEEDYHAVVARVFVKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNPDILENFSAEYLYLSCIAFVKKVKKGLFAEHSPLLDDISGVPAWKKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIKWYDSLVYSLHVFTTLISVLFSQL 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2401008 2404294 + CmaCh05G005040.1 Cma05g00504 294622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00504 763 MobiDBLite consensus disorder prediction 389 412 - -
Cma05g00504 763 PANTHER PROTEIN EXORDIUM-LIKE 5 1 313 IPR006766 -
Cma05g00504 763 CDD PTPA 472 736 IPR004327 GO:0019211
Cma05g00504 763 Pfam Phosphate-induced protein 1 conserved region 37 313 IPR006766 -
Cma05g00504 763 MobiDBLite consensus disorder prediction 334 372 - -
Cma05g00504 763 Gene3D - 636 748 IPR043170 -
Cma05g00504 763 SUPERFAMILY PTPA-like 447 743 IPR037218 GO:0019211
Cma05g00504 763 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 450 741 IPR004327 GO:0019211
Cma05g00504 763 PANTHER PHOSPHATE-RESPONSIVE 1 FAMILY PROTEIN 1 313 - -
Cma05g00504 763 MobiDBLite consensus disorder prediction 389 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00504 K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator - csv:101220873 710.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01613 Cma-Chr1:11105917 Cma05g00504 Cma-Chr5:2401008 5.82E-24 dispersed
Cma04g00406 Cma-Chr4:2073506 Cma05g00504 Cma-Chr5:2401008 8.22E-123 dispersed
Cma05g00504 Cma-Chr5:2401008 Cma12g00164 Cma-Chr12:730059 9.51E-173 dispersed
Cma01g01612 Cma-Chr1:11103533 Cma05g00504 Cma-Chr5:2401008 6.22E-131 wgd
Cma12g00163 Cma-Chr12:725377 Cma05g00504 Cma-Chr5:2401008 3.86E-98 wgd
Cma05g00504 Cma-Chr5:2401008 Cma09g00565 Cma-Chr9:2564998 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g424 . . Bda01g00889 . Bpe02g00113 . . . Cmo05g00530 . . . Car01g01230 Car12g00150 Sed04g0148 . Cpe07g00138 Bhi04g00770 Tan02g2401 Cmetu03g2126 . Hepe10g0490 . Lcy13g1554 Cla08g01116 Cam08g1572 Cec08g1142 Cco08g1269 Clacu08g1273 . Cre08g1054 . . . . Lsi04g02241 Csa03g04452 . . . . Bda11g00770 . Bpe02g01125 Bpe14g00457 . . . Cmo01g01658 . . Cma05g00504 Car05g00453 . Cpe11g00443 . Bhi09g02444 Tan01g3796 . . Hepe01g2133 . . . . . . . . . Lsi08g00972 Csa02g02156 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0045774 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00504 Cma_Chr05 FPKM 33.571117 34.611809 21.250381 21.406858 40.044365 34.466869 38.760296 23.014435 23.727398 22.366678