Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00515 ATGGCGTTGGAAGCGGTGGTTTTCCCACAAGATCCATTTACTTATGTCTGCAGGGATGTCTGTTCTTACGGCGGAGGAGGAGGAGGAGCTTGGGCCGGCTACGACCATGGCTTCCAATTAGAACAACAAAAACCCTTTCTTGGAGTGCCTGAAACGCAAACAGAGGACACAAAATTCGCCGCGAATTGGGAGGCTTCACCGGAGGAATGTTCGATTAATCAGCCTATTCCCGGAGGAGCTGTCTACACGCCGCCGCCACCGCCGTCTACCGGAAGAAGAAAGCGACGGCGGACACGGAGCACAAAAAACAGAGAGGAAATTGAAAACCAGAGGATGACACATATCGCGGTGGAGCGCAACCGTCGGAAACAAATGAATGAGTATCTGGCGATTCTCCGATCATTAATGCCGTCGTCTTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGCGCCATTAATTTTGTCAAGGAATTAGAGCAACAACTGCAGTTCATCAACACCCATAAGAACACAATCGAAAATGGCGGTTCCCCTTTTGCTGAATTCTTTTCATTCCCTCAATACTCAACAAAGAACACGGCGCATGACTCATCCATCGCTCATACCCAGTGGCCGGCCGGAGATATTGAAGTCACCATGATTGATACCCATGCCAACCTTAAAATACTGTCGCCAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTCACTGTTCTTCATCTCAATGTCACTACTTCAGATCAAATGGTTCTTTATTCTCTAAGCATTAAGGTTGAAGAAGGGTGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTGCTGTTTATTCAAGAGGAAGCTGCTTTAAATTGA 894 46.98 MALEAVVFPQDPFTYVCRDVCSYGGGGGGAWAGYDHGFQLEQQKPFLGVPETQTEDTKFAANWEASPEECSINQPIPGGAVYTPPPPPSTGRRKRRRTRSTKNREEIENQRMTHIAVERNRRKQMNEYLAILRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFINTHKNTIENGGSPFAEFFSFPQYSTKNTAHDSSIAHTQWPAGDIEVTMIDTHANLKILSPKRPRQLLKMVAGFQSLRLTVLHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLFIQEEAALN 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2458214 2459875 - CmaCh05G005150.1 Cma05g00515 294633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00515 297 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 297 - -
Cma05g00515 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 177 IPR036638 GO:0046983
Cma05g00515 297 Pfam Helix-loop-helix DNA-binding domain 110 161 IPR011598 GO:0046983
Cma05g00515 297 MobiDBLite consensus disorder prediction 66 106 - -
Cma05g00515 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 160 IPR011598 GO:0046983
Cma05g00515 297 Gene3D - 94 176 IPR036638 GO:0046983
Cma05g00515 297 SMART finulus 115 166 IPR011598 GO:0046983
Cma05g00515 297 PANTHER MAX DIMERIZATION, MAD 1 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00515 - - - csv:101218813 427.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01618 Cma-Chr2:9191464 Cma05g00515 Cma-Chr5:2458214 1.69E-68 dispersed
Cma05g00515 Cma-Chr5:2458214 Cma05g01154 Cma-Chr5:8975120 3.53E-89 dispersed
Cma06g00911 Cma-Chr6:5984115 Cma05g00515 Cma-Chr5:2458214 7.94E-56 transposed
Cma14g02163 Cma-Chr14:14838337 Cma05g00515 Cma-Chr5:2458214 2.18E-59 transposed
Cma12g00225 Cma-Chr12:1104808 Cma05g00515 Cma-Chr5:2458214 1.93E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g459 . . . . . . . . Cmo05g00543 . . . . . Sed08g1674 . . Bhi04g00791 Tan02g2427 Cmetu03g0550 . Hepe10g0469 . Lcy13g1533 Cla08g01134 Cam08g1591 Cec08g1161 Cco08g1287 Clacu08g1291 . Cre08g1073 Cone4ag1316 Cone7ag1260 Cone17ag1201 Cone20ag0528 . . . Cme03g01839 . . . . . . . . . . . . Cma05g00515 Car05g00466 . Cpe11g00455 . . . . . . . . . . . . . . . Lsi08g00990 Csa02g02175 Chy03g01342 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010750 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35061 PF00010 HLH 2.60E-10 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00515 Cma_Chr05 FPKM 14.174669 13.179318 5.614705 5.307181 1.710053 1.465554 1.64656 0.445499 0.252678 0.308523