Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00516 ATGACCTCTCCACCCCTCCGCCGCTGCCATGTCCTCACCGGCTTCCTTATCCATTCCATTCTCCTCTCCCACATCTCTCTCGCCGCCGCCCAATCTGGAGGACCCGCTGTTCCCAGTCCGCCGGAGATGTACTCTTTCAAACAGACAATCAGCAAACGAATGGCCGTCGTTTTGATTGTTCTCGTTTGCTTCTTTATCGTTCTTGCCCTCCTCTCCGTTTACACCCGCCAGTGCAACGATCAACGTTTTGGCGGCCACCTTCTCCTCCCCACAGCCGCAGAAGGAATCAACGGCCGACCAAGAAGGGCGGCGCGTGGTCTCGATGCGGCTGTTATAGCTTCTTTCCCAACATTCGTGTATTCCAACGTAAAGGGTCTCAAAATTGGGAAAGGCGCATTGGAATGCGCCGTTTGTTTATCCGAATTCGAAGATGATAATACGCTGCGTTTGTTGCCGAAATGTAGCCATGTCTTCCACTCCGATTGCATCGACGCTTGGTTGGTGTCTCACTCTACCTGCCCTGTTTGCCGCGCCAGTCTCGTCCCCAAACCCGGCGACATCTCCTTTGCTGCTCTGCTCGATTCCGATTCAAGAATCCACGGCGATGACGGAAATCGAGTGGCCGGATTGGAAAATTGTCAAGTGGGTATACGAATTCCAGAGGGGAATCCCCAAAATCAGGGATTGAATCAGAACGGTCCAATTAGGTCGCGATCGACGGGATGGAGATTGATCGGACTGTTCCCTCGATCCCACTCGACGGGACACTCGCTGGTTCAAATAGGGGCGGATTACGAAAGGTTTACTCTGAGATTGCCGACGGAGGTGAGAAGTGAGCTGTTGAATTCGAATTTGAATCGGGCGAGGAGCTGCGTGGCGTTGCCGAGGGTGCAGAGTTCGAGACAGGGGTATCGTAGTGAATTGGGGAAAAATGGGTTTGTGGGCAATCGAAGCCGCAGTGGGCGTTCGGAGTGGTGGACATTTTTCCCGGCGACGCCGTTGTTCAGAAGGGAGGGTTCTAGAAATGATGCAAATGTGAATGTGAATGGAGACGGCGGTGGACGGCCGTTTGTACGATTGCGAGATGATGGACATGTTGTTATTGATCGATCGTATGAACAATATGCAATGGCCATAGATCAGACCAAGAAGCTCAAGAATCTCATCGACGCTTTCAAAGATCAGGCCTCAATAATCAAAGCCACTTTCTCAATTCATCGCCGTTCATCTTCCATTAAAGTCGCCGTCGTCCGTGCCACCACGCACGGCGCCAGAAACCCACCTTCCGACGCCCGACTCGCTGCTCTGTTAGCCCTTGGAAATGACTTCCGTTCCTCCACGGCATTTGTCTGCATCCAAGCCTTGATGGAACGGCTTCATACAACCACGAGCGCCGCCGTGGCCATGAAATCGCTTTTCACTCTGCATATAATTGTAATTCGAGGTCCGTTTAATCTGAGGGATGAGGTGGCGTTTTCCCCTTATTACGGAGGGCGAAATTTTCTAAATTTGTCCGCGTTTCGCGACGTATCGGACTCGGAGATGAGCGAGTTGTCGTGTTGGGTGAGATGGTATGCAGGGGTTGTGGAACATATCAGGAAATTGGATTGGATTCTGTATTTTCGTTCAAGAAATCCCGAAATTGTGGAAGGTAAAGACAGGAAGATTCCCGAATTGTTGGAGGAATTGGATGTTCTTTTGGGTTTTTTAGAGCGGATTTCGGAAGTTCCCGAGTCGTTGCATGTCCAGAAATCGGATTTGGTTTACGAGGTTGTGAGATTGGTTCTGGAGAGTTACCGGTTGGTGCAGAGGGAGATTCGGGTCCGAGTTAACGAAATCGGAAACAGAGTCGAGTGGCTGAGTCGGGACGAGTTAACCGAGTCGGTGGAGATTCTGACTCGGATGGAAAATTGCAGAAGGAAAGTGAGTGTGTTGTTTGTGAACAGAGGGAAGAACGATGAGTTGTGGGAACTGGTGACGTGTACGAAAGGGAAACTGGTGGAGCGGAGGAGGAGGATGACGACAATGACCGAGTCGACTCGGTTGTGGAACCCGTTTGTTGAACCGGGTTCATTGAGACCGTTGGGCCCGGCTTTGCTTCCACTGACCGTTTCAACGGTAGGATAG 2127 51.39 MTSPPLRRCHVLTGFLIHSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLSVYTRQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALECAVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDSDSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGLNQNGPIRSRSTGWRLIGLFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRARSCVALPRVQSSRQGYRSELGKNGFVGNRSRSGRSEWWTFFPATPLFRREGSRNDANVNVNGDGGGRPFVRLRDDGHVVIDRSYEQYAMAIDQTKKLKNLIDAFKDQASIIKATFSIHRRSSSIKVAVVRATTHGARNPPSDARLAALLALGNDFRSSTAFVCIQALMERLHTTTSAAVAMKSLFTLHIIVIRGPFNLRDEVAFSPYYGGRNFLNLSAFRDVSDSEMSELSCWVRWYAGVVEHIRKLDWILYFRSRNPEIVEGKDRKIPELLEELDVLLGFLERISEVPESLHVQKSDLVYEVVRLVLESYRLVQREIRVRVNEIGNRVEWLSRDELTESVEILTRMENCRRKVSVLFVNRGKNDELWELVTCTKGKLVERRRRMTTMTESTRLWNPFVEPGSLRPLGPALLPLTVSTVG 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2466092 2469264 + CmaCh05G005160.1 Cma05g00516 294634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00516 708 Gene3D - 383 536 IPR008942 -
Cma05g00516 708 PANTHER CLATHRIN ASSEMBLY PROTEIN 380 687 IPR045192 GO:0048268|GO:0072583
Cma05g00516 708 SMART ring_2 135 176 IPR001841 -
Cma05g00516 708 SUPERFAMILY ENTH/VHS domain 410 529 IPR008942 -
Cma05g00516 708 SUPERFAMILY RING/U-box 129 185 - -
Cma05g00516 708 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Cma05g00516 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Cma05g00516 708 Pfam Ring finger domain 134 177 IPR001841 -
Cma05g00516 708 CDD RING-H2_PA-TM-RING 134 177 - -
Cma05g00516 708 CDD ANTH_N_AP180_plant 412 531 - -
Cma05g00516 708 Pfam ANTH domain 412 527 IPR011417 GO:0005543
Cma05g00516 708 PANTHER CLATHRIN ASSEMBLY PROTEIN 380 687 - -
Cma05g00516 708 ProSiteProfiles ENTH domain profile. 404 543 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00516 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - csv:101209245 502.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00516 Cma-Chr5:2466092 Cma11g00340 Cma-Chr11:1698789 2.53E-26 dispersed
Cma13g01016 Cma-Chr13:7805119 Cma05g00516 Cma-Chr5:2466092 2.46E-06 dispersed
Cma17g00340 Cma-Chr17:1854226 Cma05g00516 Cma-Chr5:2466092 2.18E-22 dispersed
Cma05g01152 Cma-Chr5:8960361 Cma05g00516 Cma-Chr5:2466092 2.66E-76 transposed
Cma16g00729 Cma-Chr16:3836286 Cma05g00516 Cma-Chr5:2466092 1.51E-40 transposed
Cma12g00224 Cma-Chr12:1094341 Cma05g00516 Cma-Chr5:2466092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00516 Cma_Chr05 FPKM 4.878232 5.84216 4.90013 5.107399 2.432154 2.468825 1.914289 4.508833 3.712268 3.844597