Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00520 ATGAAACGCCTCGGCTGGCTAGGGCTGTGCCGGCGGCAATTACTCTCATCAGTAGGAGGGTTGTCCATTGATCCACGGCTCCCGCTCGGAAAAGTTCCATCGTTACGCCAATTTTTTTCTTGTGCCCGAGCGTTGCAATCATGTTCTTCTGCCGTCGGTAAAGCTCCTGACTTCGCCACAGGATTTCCGGCGAGTAGATGTTTCATACATGCCACAGGTTCATGTCATTCTATTGAACGAGATTACTATGAAATTCTCGGGGTTCAACACAATGCCAGTCGAGAAGAGATTAAAAAGGCATACCATGCGTTGGCCAAGAAGTACCATCCGGATGCAAACAAGAACAATCCTTCTGCCAAGAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTACAGGATTCTGAGAAGAGATCCCAATATGACCAGAGGCGTGGTGGAGAATTTGAAAATTCAGGTTTTGGTACTGGTGACGCAGATGGGTTTAGCTATACTTATCGAACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTGCCTCAGATATTCAGGTTTCCCTGTCATTATCTTTTACAGAAGCTGCTAAAGGATGCACAAAGCATTTGTCCTTTGATGCTATGGTTCCCTGTGATTCTTGCTATGGGCGTGGCTTTCCAGTAAATGCAACGAAAAGAAGTTGCCCTACTTGCAGAGGTTTAGGTAGAGTTACTATTCCTCCATTTACATCAACATGCACCACTTGCAAAGGATCGGGTCAAATCATTAAGGAATTATGTGTGGAATGCAGGGGAATGGGGGTTGTGGCGGGTGTCAAGGAGGTCACAGTTACCATACCTGCTGGGGTTGATTCTGGAGATACCATTCGTGTGCCAGAAGCTGGTAATAGCGGTGGACGAGAAAGTCAATCTGGCAACTTGATTATTAAATTGAAGGCAAAAACTCGTTTATATTTTCCTTATGCTTACTTTAGAAATGTTGCTGAAGATCGTGTCTTTAAGAGGGATGGTGTGGACATTTATGTGGATTCTAATGTCAGCTTTACTCAAGCTATTCTTGGTGGCAAGGTTGAGGTTCCAACGTTGTCAGGCAAGATTGAAATAAATATACCAAAAGGCGTTCAGCCGGGACAGCTCTTAATACTGAGAGGGAAAGGATTGCCAAAACATGGACTTTTTGTTGATCGTGGAGATCAATATGTGCGCTTCCGTATTAAATTTCCCACTGAAATAAGTGAACGACAACGTGCCATTTTGGAAGAGTTTGCTGAAGAAGAAATAAAGAATGGGATTGACAACTCAAATGAAGCAAGTTGGTGGCAACAAATTCTTGACCATGTTGGGGAACCTAAATTTGTTATTGAATTGTCCCTACTTATCTTGCTCGCTGTGTTCCTGAGTAAAACAATGGGCTGA 1446 43.43 MKRLGWLGLCRRQLLSSVGGLSIDPRLPLGKVPSLRQFFSCARALQSCSSAVGKAPDFATGFPASRCFIHATGSCHSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQRRGGEFENSGFGTGDADGFSYTYRTHFSDSFQKIFSEIFEHETSRFASDIQVSLSLSFTEAAKGCTKHLSFDAMVPCDSCYGRGFPVNATKRSCPTCRGLGRVTIPPFTSTCTTCKGSGQIIKELCVECRGMGVVAGVKEVTVTIPAGVDSGDTIRVPEAGNSGGRESQSGNLIIKLKAKTRLYFPYAYFRNVAEDRVFKRDGVDIYVDSNVSFTQAILGGKVEVPTLSGKIEINIPKGVQPGQLLILRGKGLPKHGLFVDRGDQYVRFRIKFPTEISERQRAILEEFAEEEIKNGIDNSNEASWWQQILDHVGEPKFVIELSLLILLAVFLSKTMG 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2483926 2493733 - CmaCh05G005200.1 Cma05g00520 294638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00520 481 ProSiteProfiles dnaJ domain profile. 81 146 IPR001623 -
Cma05g00520 481 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 457 - -
Cma05g00520 481 Gene3D - 216 250 - -
Cma05g00520 481 Gene3D - 251 285 - -
Cma05g00520 481 Pfam DnaJ C terminal domain 194 418 IPR002939 -
Cma05g00520 481 Pfam DnaJ central domain 221 277 IPR001305 GO:0031072|GO:0051082
Cma05g00520 481 CDD DnaJ 81 135 IPR001623 -
Cma05g00520 481 PRINTS DnaJ domain signature 83 101 IPR001623 -
Cma05g00520 481 PRINTS DnaJ domain signature 118 138 IPR001623 -
Cma05g00520 481 PRINTS DnaJ domain signature 101 116 IPR001623 -
Cma05g00520 481 PRINTS DnaJ domain signature 138 157 IPR001623 -
Cma05g00520 481 CDD DnaJ_C 192 421 - -
Cma05g00520 481 Pfam DnaJ domain 81 143 IPR001623 -
Cma05g00520 481 SUPERFAMILY HSP40/DnaJ peptide-binding domain 342 429 IPR008971 GO:0006457|GO:0051082
Cma05g00520 481 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Cma05g00520 481 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 31 457 - -
Cma05g00520 481 SMART dnaj_3 80 138 IPR001623 -
Cma05g00520 481 Gene3D DnaJ domain 78 191 IPR036869 -
Cma05g00520 481 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 279 IPR036410 -
Cma05g00520 481 Hamap Chaperone protein DnaJ [dnaJ]. 78 462 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cma05g00520 481 ProSiteProfiles Zinc finger CR-type profile. 208 282 IPR001305 GO:0031072|GO:0051082
Cma05g00520 481 Gene3D - 339 448 - -
Cma05g00520 481 MobiDBLite consensus disorder prediction 134 153 - -
Cma05g00520 481 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 324 IPR008971 GO:0006457|GO:0051082
Cma05g00520 481 Gene3D - 192 321 - -
Cma05g00520 481 SUPERFAMILY Chaperone J-domain 80 173 IPR036869 -
Cma05g00520 481 CDD DnaJ_zf 221 277 IPR001305 GO:0031072|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00520 - - - csv:101208756 778.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00520 Cma-Chr5:2483926 Cma17g00938 Cma-Chr17:7023314 9.01E-85 dispersed
Cma05g00520 Cma-Chr5:2483926 Cma08g00547 Cma-Chr8:3132349 1.01E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00520 Cma_Chr05 FPKM 3.219867 2.860612 4.684381 5.651318 4.514135 4.007255 4.755684 7.794318 7.441016 7.536687