Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00527 | ATGGATTTCGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACTCCGCCGCCACCCGGTGAGGGTTCATCGGCGGAGAGAAAAACCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTCTACCGGCGGGAGAGGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACATCAACATCATCAGTTTTCTTATCGTGGGCCCCCACACCCTTCTGCTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCAGGGAGGGAGGAGGAGGATAACACATCTAATCCGAGCAGTAGCGGCGGAGGGAGCGGCGGAAGTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGAACCACCGGTGTCCGGCGGCAGGTGCTTAAGGTGTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG | 732 | 52.46 | MDFDEEHDDQDDEVIEEMPIAHHFDATPPPPGEGSSAERKTGGGGGGGGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSAYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGSGGSGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2518379 | 2519110 | - | CmaCh05G005270.1 | Cma05g00527 | 294645 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00527 | 243 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 55 | 104 | IPR006456 | - | |
Cma05g00527 | 243 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 49 | 239 | - | - | |
Cma05g00527 | 243 | Gene3D | - | 161 | 238 | - | - | |
Cma05g00527 | 243 | MobiDBLite | consensus disorder prediction | 147 | 176 | - | - | |
Cma05g00527 | 243 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cma05g00527 | 243 | Pfam | ZF-HD protein dimerisation region | 53 | 105 | IPR006456 | - | |
Cma05g00527 | 243 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cma05g00527 | 243 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 54 | 104 | IPR006456 | - | |
Cma05g00527 | 243 | SUPERFAMILY | Homeodomain-like | 164 | 238 | IPR009057 | - | |
Cma05g00527 | 243 | MobiDBLite | consensus disorder prediction | 155 | 171 | - | - | |
Cma05g00527 | 243 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 49 | 239 | - | - | |
Cma05g00527 | 243 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 177 | 233 | IPR006455 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00745 | Cma-Chr3:5899158 | Cma05g00527 | Cma-Chr5:2518379 | 7.20E-57 | dispersed | |
Cma04g00837 | Cma-Chr4:4301472 | Cma05g00527 | Cma-Chr5:2518379 | 3.27E-51 | dispersed | |
Cma05g00527 | Cma-Chr5:2518379 | Cma06g00008 | Cma-Chr6:32657 | 2.60E-55 | dispersed | |
Cma12g00219 | Cma-Chr12:1073873 | Cma05g00527 | Cma-Chr5:2518379 | 4.69E-81 | wgd | |
Cma03g00832 | Cma-Chr3:6284164 | Cma05g00527 | Cma-Chr5:2518379 | 1.31E-69 | wgd | |
Cma05g00527 | Cma-Chr5:2518379 | Cma07g00562 | Cma-Chr7:2432332 | 2.78E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35062 | PF04770 | ZF-HD_dimer | 2.60E-29 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00527 | - | - | csv:101216697 | 345.125 |