Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00527 ATGGATTTCGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACTCCGCCGCCACCCGGTGAGGGTTCATCGGCGGAGAGAAAAACCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTCTACCGGCGGGAGAGGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACATCAACATCATCAGTTTTCTTATCGTGGGCCCCCACACCCTTCTGCTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCAGGGAGGGAGGAGGAGGATAACACATCTAATCCGAGCAGTAGCGGCGGAGGGAGCGGCGGAAGTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGAACCACCGGTGTCCGGCGGCAGGTGCTTAAGGTGTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG 732 52.46 MDFDEEHDDQDDEVIEEMPIAHHFDATPPPPGEGSSAERKTGGGGGGGGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSAYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGSGGSGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2518379 2519110 - CmaCh05G005270.1 Cma05g00527 294645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00527 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Cma05g00527 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 239 - -
Cma05g00527 243 Gene3D - 161 238 - -
Cma05g00527 243 MobiDBLite consensus disorder prediction 147 176 - -
Cma05g00527 243 MobiDBLite consensus disorder prediction 1 15 - -
Cma05g00527 243 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Cma05g00527 243 MobiDBLite consensus disorder prediction 1 48 - -
Cma05g00527 243 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
Cma05g00527 243 SUPERFAMILY Homeodomain-like 164 238 IPR009057 -
Cma05g00527 243 MobiDBLite consensus disorder prediction 155 171 - -
Cma05g00527 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 49 239 - -
Cma05g00527 243 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 177 233 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00527 - - - csv:101216697 345.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00745 Cma-Chr3:5899158 Cma05g00527 Cma-Chr5:2518379 7.20E-57 dispersed
Cma04g00837 Cma-Chr4:4301472 Cma05g00527 Cma-Chr5:2518379 3.27E-51 dispersed
Cma05g00527 Cma-Chr5:2518379 Cma06g00008 Cma-Chr6:32657 2.60E-55 dispersed
Cma12g00219 Cma-Chr12:1073873 Cma05g00527 Cma-Chr5:2518379 4.69E-81 wgd
Cma03g00832 Cma-Chr3:6284164 Cma05g00527 Cma-Chr5:2518379 1.31E-69 wgd
Cma05g00527 Cma-Chr5:2518379 Cma07g00562 Cma-Chr7:2432332 2.78E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35062 PF04770 ZF-HD_dimer 2.60E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00527 Cma_Chr05 FPKM 0.234973 0.205015 0.377858 0.595904 40.473171 43.746986 37.818367 0.0 0.0 0.173192