Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00527 ATGGATTTCGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACTCCGCCGCCACCCGGTGAGGGTTCATCGGCGGAGAGAAAAACCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTCTACCGGCGGGAGAGGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACATCAACATCATCAGTTTTCTTATCGTGGGCCCCCACACCCTTCTGCTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCAGGGAGGGAGGAGGAGGATAACACATCTAATCCGAGCAGTAGCGGCGGAGGGAGCGGCGGAAGTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGAACCACCGGTGTCCGGCGGCAGGTGCTTAAGGTGTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG 732 52.46 MDFDEEHDDQDDEVIEEMPIAHHFDATPPPPGEGSSAERKTGGGGGGGGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSAYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGSGGSGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2518379 2519110 - CmaCh05G005270.1 Cma05g00527 294645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00527 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Cma05g00527 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 239 - -
Cma05g00527 243 Gene3D - 161 238 - -
Cma05g00527 243 MobiDBLite consensus disorder prediction 147 176 - -
Cma05g00527 243 MobiDBLite consensus disorder prediction 1 15 - -
Cma05g00527 243 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Cma05g00527 243 MobiDBLite consensus disorder prediction 1 48 - -
Cma05g00527 243 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
Cma05g00527 243 SUPERFAMILY Homeodomain-like 164 238 IPR009057 -
Cma05g00527 243 MobiDBLite consensus disorder prediction 155 171 - -
Cma05g00527 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 49 239 - -
Cma05g00527 243 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 177 233 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00745 Cma-Chr3:5899158 Cma05g00527 Cma-Chr5:2518379 7.20E-57 dispersed
Cma04g00837 Cma-Chr4:4301472 Cma05g00527 Cma-Chr5:2518379 3.27E-51 dispersed
Cma05g00527 Cma-Chr5:2518379 Cma06g00008 Cma-Chr6:32657 2.60E-55 dispersed
Cma12g00219 Cma-Chr12:1073873 Cma05g00527 Cma-Chr5:2518379 4.69E-81 wgd
Cma03g00832 Cma-Chr3:6284164 Cma05g00527 Cma-Chr5:2518379 1.31E-69 wgd
Cma05g00527 Cma-Chr5:2518379 Cma07g00562 Cma-Chr7:2432332 2.78E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35062 PF04770 ZF-HD_dimer 2.60E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00527 - - csv:101216697 345.125