Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00530 ATGGCGCCATATTATCTTAAAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATGAGCGATGAATGCTTGATTGAAATGGTCGAGAAGGAAACCCATCACTTGCCTCTTCATGGGTACCTCCTGAAGTTCCACAACGGCGACTTGGATGTTCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAATTACTTGGATCGCTTCCTCTCCGCTTATGATCTACCCAAAGGCAGAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCTCTCTCATTGGATTTACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACCCCTTTCTCGTTTATCGATCATTACCTTCGAAAGATCCACTACGACGAATTCTCTCTCGAAATGTCAATCGAGCAATCGAGTCGTCTACTCTTGAACATAATACATGGTATCGAGTTCTTGGAATTCAAACCATCGGAGATTGCAGCAGCTGTGGCGATATCAGTCGCCGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAACTCCAAATGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACATGTTCGTCTGCGGGGGTGGGTTGGGGAAGGGCTCGAGAGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCAGGGTGTTGGAGATGACATGCTTAAGCTATACAAGCAATGACACAGCAGTTGTGTCGTGTGCAAACTCAAATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGA 948 46.62 MAPYYLKTHRNRSHRRGASDGLPFMSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLCIYLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNIIHGIEFLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMFVCGGGLGKGSRASMSSERRSPSRVLEMTCLSYTSNDTAVVSCANSNATKRRRLNRPCEVNF 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2535606 2537595 - CmaCh05G005300.1 Cma05g00530 294648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00530 315 Gene3D - 43 160 - -
Cma05g00530 315 SMART cyclin_7 65 153 IPR013763 -
Cma05g00530 315 Pfam Cyclin, C-terminal domain 162 254 IPR004367 -
Cma05g00530 315 CDD CYCLIN 60 152 IPR013763 -
Cma05g00530 315 Gene3D - 32 247 - -
Cma05g00530 315 PANTHER CYCLINS 14 305 IPR039361 -
Cma05g00530 315 Pfam Cyclin, N-terminal domain 33 159 IPR006671 -
Cma05g00530 315 SUPERFAMILY Cyclin-like 145 254 IPR036915 -
Cma05g00530 315 SMART Cyclin_C_2 162 287 IPR004367 -
Cma05g00530 315 ProSitePatterns Cyclins signature. 60 91 IPR006671 -
Cma05g00530 315 SUPERFAMILY Cyclin-like 24 159 IPR036915 -
Cma05g00530 315 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 14 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00530 Cma-Chr5:2535606 Cma16g00310 Cma-Chr16:1444756 1.46E-55 dispersed
Cma12g00214 Cma-Chr12:1052341 Cma05g00530 Cma-Chr5:2535606 1.33E-144 wgd
Cma03g00834 Cma-Chr3:6287640 Cma05g00530 Cma-Chr5:2535606 1.29E-85 wgd
Cma05g00530 Cma-Chr5:2535606 Cma07g00564 Cma-Chr7:2439307 6.44E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00530 K18810 - csv:101216206 495.352