Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00530 | ATGGCGCCATATTATCTTAAAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATGAGCGATGAATGCTTGATTGAAATGGTCGAGAAGGAAACCCATCACTTGCCTCTTCATGGGTACCTCCTGAAGTTCCACAACGGCGACTTGGATGTTCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAATTACTTGGATCGCTTCCTCTCCGCTTATGATCTACCCAAAGGCAGAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCTCTCTCATTGGATTTACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACCCCTTTCTCGTTTATCGATCATTACCTTCGAAAGATCCACTACGACGAATTCTCTCTCGAAATGTCAATCGAGCAATCGAGTCGTCTACTCTTGAACATAATACATGGTATCGAGTTCTTGGAATTCAAACCATCGGAGATTGCAGCAGCTGTGGCGATATCAGTCGCCGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAACTCCAAATGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACATGTTCGTCTGCGGGGGTGGGTTGGGGAAGGGCTCGAGAGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCAGGGTGTTGGAGATGACATGCTTAAGCTATACAAGCAATGACACAGCAGTTGTGTCGTGTGCAAACTCAAATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGA | 948 | 46.62 | MAPYYLKTHRNRSHRRGASDGLPFMSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLCIYLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNIIHGIEFLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMFVCGGGLGKGSRASMSSERRSPSRVLEMTCLSYTSNDTAVVSCANSNATKRRRLNRPCEVNF | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2535606 | 2537595 | - | CmaCh05G005300.1 | Cma05g00530 | 294648 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00530 | 315 | Gene3D | - | 43 | 160 | - | - | |
Cma05g00530 | 315 | SMART | cyclin_7 | 65 | 153 | IPR013763 | - | |
Cma05g00530 | 315 | Pfam | Cyclin, C-terminal domain | 162 | 254 | IPR004367 | - | |
Cma05g00530 | 315 | CDD | CYCLIN | 60 | 152 | IPR013763 | - | |
Cma05g00530 | 315 | Gene3D | - | 32 | 247 | - | - | |
Cma05g00530 | 315 | PANTHER | CYCLINS | 14 | 305 | IPR039361 | - | |
Cma05g00530 | 315 | Pfam | Cyclin, N-terminal domain | 33 | 159 | IPR006671 | - | |
Cma05g00530 | 315 | SUPERFAMILY | Cyclin-like | 145 | 254 | IPR036915 | - | |
Cma05g00530 | 315 | SMART | Cyclin_C_2 | 162 | 287 | IPR004367 | - | |
Cma05g00530 | 315 | ProSitePatterns | Cyclins signature. | 60 | 91 | IPR006671 | - | |
Cma05g00530 | 315 | SUPERFAMILY | Cyclin-like | 24 | 159 | IPR036915 | - | |
Cma05g00530 | 315 | PANTHER | CARBOXY-TERMINAL DOMAIN CYCLIN | 14 | 305 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00530 | Cma-Chr5:2535606 | Cma16g00310 | Cma-Chr16:1444756 | 1.46E-55 | dispersed | |
Cma12g00214 | Cma-Chr12:1052341 | Cma05g00530 | Cma-Chr5:2535606 | 1.33E-144 | wgd | |
Cma03g00834 | Cma-Chr3:6287640 | Cma05g00530 | Cma-Chr5:2535606 | 1.29E-85 | wgd | |
Cma05g00530 | Cma-Chr5:2535606 | Cma07g00564 | Cma-Chr7:2439307 | 6.44E-93 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00530 | K18810 | - | csv:101216206 | 495.352 |