Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00531 ATGGCCTTTACTCTCTGCAGCAGAGTCGCGACTCCATTGCTATCACCCTCTGTCCTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGATTCTCCAATCTCTTCGTCTCCAGAACGGGTTCCGCTCTGTCGCTGCCTTTTGCACCTCTCTTGAGATCGACGTTTGGTAGTCAAGGACCTGCTAGGAACGTGCATTTGATAAAAATGGAAGGGAATAGTGCCGCGGTGCCTAGCATTGTTGTTTATGTTACTGTTCCTAACAGGGAAGCAGGTAAGAAACTAGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTTCCCGGTATAGAATCCGTCTACCAGTGGAAGGGAGAGATCCAAACAGACGCTGAGGAACTTCTGATTATTAAGACCAGGCAATCACTTCTGGGAGCACTGACAGATCATGTTAAGGCAAATCACCCATACGAGGTGCCTGAAGTTATTGCTTTGCCTATCAATGGTGGCAGCGTGGAGTACCTAGAGTGGATCAAGAGCAGCACGAAGGACTGA 558 48.03 MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSRTGSALSLPFAPLLRSTFGSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSVEYLEWIKSSTKD 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2542802 2546047 + CmaCh05G005310.1 Cma05g00531 294649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00531 185 Pfam CutA1 divalent ion tolerance protein 84 181 IPR004323 GO:0010038
Cma05g00531 185 PANTHER PROTEIN CUTA CHLOROPLASTIC 16 184 - -
Cma05g00531 185 Gene3D - 63 184 IPR015867 -
Cma05g00531 185 PANTHER DIVALENT CATION TOLERANCE CUTA-RELATED 16 184 IPR004323 GO:0010038
Cma05g00531 185 SUPERFAMILY GlnB-like 83 184 IPR011322 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00531 K03926 cutA; periplasmic divalent cation tolerance protein - csv:101215963 323.168
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g484 . . . . . . . . Cmo05g00558 . . . . . . . . . . . . . . . Cla08g01150 Cam08g1610 Cec08g1182 Cco08g1307 Clacu08g1309 . Cre08g1093 . . Cone17ag1188 Cone20ag0546 . . . Cme03g01822 Blo17g00101 . . Bda13g01368 . Bpe14g00478 . . . . . . Cma05g00531 Car05g00479 . Cpe11g00468 . . . . . . . . . . . . . . . Lsi08g01008 Csa02g02192 Chy03g01324 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011262 1 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00531 Cma_Chr05 FPKM 16.163752 15.802261 50.576904 43.553993 30.698761 36.616596 33.561684 69.424828 72.006927 70.044807