Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00535 ATGTGGGTCCCACTGTCGCCGTCATTATTTTCAGGTGCAATTAGGGCTTTCGACGAGCTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGACGGTGAATATGAAGATGATGGTGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTTATGGTGTCTAGAACTAGTGAGCTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGACGTGATGTACCAACCGGTGTGCCTACAATGGAAGTGCCATACGATGATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAGGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTAGTCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAACGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACTTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCCATGCAAATTGCCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATGTTCAAGTGTGCAGTGGTCAATCTTTTGGCCGGGACGTTGCACGCTGCTTTCAGCTTAAGTTAGGTCGTCTAACAGTGTTGATATTGCTGCCAGAATCTATTTGTGTTCACTGTACGAGTCAAGTTGTTAGGGGATACGCTTGA 1230 47.48 MWVPLSPSLFSGAIRAFDELMAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGDVMDDVEGAHMTSVSVVKHGGLVMVSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDDNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGSGASSWESAHSCLQDGSRSETVLRKCQHCGVNENNTPAMRRGPAGLRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSLDPVEEDINETTVELTNSLPMQIANHSTNGDEQEPLIELANPSDTDVQVCSGQSFGRDVARCFQLKLGRLTVLILLPESICVHCTSQVVRGYA 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2594145 2604076 - CmaCh05G005350.1 Cma05g00535 294653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00535 409 MobiDBLite consensus disorder prediction 306 320 - -
Cma05g00535 409 CDD ZnF_GATA 221 265 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 21 367 - -
Cma05g00535 409 Pfam tify domain 87 117 IPR010399 -
Cma05g00535 409 Pfam GATA zinc finger 222 258 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 Pfam CCT motif 151 192 IPR010402 GO:0005515
Cma05g00535 409 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 266 - -
Cma05g00535 409 SMART GATA_3 216 269 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 ProSiteProfiles Tify domain profile. 83 118 IPR010399 -
Cma05g00535 409 PANTHER GATA TRANSCRIPTION FACTOR 28 21 367 IPR045280 GO:0006355
Cma05g00535 409 Gene3D - 214 272 IPR013088 GO:0006355|GO:0008270
Cma05g00535 409 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515
Cma05g00535 409 MobiDBLite consensus disorder prediction 292 320 - -
Cma05g00535 409 SMART tify_2 83 118 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00535 - - - mcha:111004894 622.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00535 Cma-Chr5:2594145 Cma17g00633 Cma-Chr17:5374354 5.62E-67 dispersed
Cma05g00535 Cma-Chr5:2594145 Cma05g00536 Cma-Chr5:2605144 3.61E-60 tandem
Cma12g00207 Cma-Chr12:975513 Cma05g00535 Cma-Chr5:2594145 2.28E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma17g00207 CCT 1 180 Tify Gene Family AT4G14713 52.1 2.7e-45 179.5
Cma08g01125 . 1 180 Tify Gene Family AT4G14713 51.6 3.9e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35063 PF06203 CCT 1.60E-13 CL0281 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00535 Cma_Chr05 FPKM 20.333729 20.865608 4.853559 4.770913 5.076713 6.613596 5.092408 14.539288 14.256343 13.264478