Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00535 ATGTGGGTCCCACTGTCGCCGTCATTATTTTCAGGTGCAATTAGGGCTTTCGACGAGCTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTCCTACAATGATGGGGAATGACGACGGTGAATATGAAGATGATGGTGGCGGCGGCGGAGATGTTATGGATGATGTCGAAGGGGCTCATATGACTTCGGTGAGCGTAGTGAAGCATGGTGGGTTGGTTATGGTGTCTAGAACTAGTGAGCTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGACGTGATGTACCAACCGGTGTGCCTACAATGGAAGTGCCATACGATGATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATTGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAGGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTAGTCGTTCTGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAACGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACTTAGGACTTTATGCAATGCATGTGGTCTGATGTGGGCAAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCCAGTAATCCTTCCCTTGACCCGGTTGAGGAAGATATAAATGAAACCACTGTAGAGCTTACAAATTCGTTGCCCATGCAAATTGCCAATCATTCAACAAATGGTGATGAGCAGGAACCTCTTATTGAACTTGCTAATCCTTCGGATACCGATGTTCAAGTGTGCAGTGGTCAATCTTTTGGCCGGGACGTTGCACGCTGCTTTCAGCTTAAGTTAGGTCGTCTAACAGTGTTGATATTGCTGCCAGAATCTATTTGTGTTCACTGTACGAGTCAAGTTGTTAGGGGATACGCTTGA 1230 47.48 MWVPLSPSLFSGAIRAFDELMAAANPQPLQARPFQEHVQVPTMMGNDDGEYEDDGGGGGDVMDDVEGAHMTSVSVVKHGGLVMVSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDDNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGSGASSWESAHSCLQDGSRSETVLRKCQHCGVNENNTPAMRRGPAGLRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSLDPVEEDINETTVELTNSLPMQIANHSTNGDEQEPLIELANPSDTDVQVCSGQSFGRDVARCFQLKLGRLTVLILLPESICVHCTSQVVRGYA 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2594145 2604076 - CmaCh05G005350.1 Cma05g00535 294653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00535 409 MobiDBLite consensus disorder prediction 306 320 - -
Cma05g00535 409 CDD ZnF_GATA 221 265 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 21 367 - -
Cma05g00535 409 Pfam tify domain 87 117 IPR010399 -
Cma05g00535 409 Pfam GATA zinc finger 222 258 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 Pfam CCT motif 151 192 IPR010402 GO:0005515
Cma05g00535 409 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 266 - -
Cma05g00535 409 SMART GATA_3 216 269 IPR000679 GO:0006355|GO:0043565
Cma05g00535 409 ProSiteProfiles Tify domain profile. 83 118 IPR010399 -
Cma05g00535 409 PANTHER GATA TRANSCRIPTION FACTOR 28 21 367 IPR045280 GO:0006355
Cma05g00535 409 Gene3D - 214 272 IPR013088 GO:0006355|GO:0008270
Cma05g00535 409 ProSiteProfiles CCT domain profile. 151 193 IPR010402 GO:0005515
Cma05g00535 409 MobiDBLite consensus disorder prediction 292 320 - -
Cma05g00535 409 SMART tify_2 83 118 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00535 Cma-Chr5:2594145 Cma17g00633 Cma-Chr17:5374354 5.62E-67 dispersed
Cma05g00535 Cma-Chr5:2594145 Cma05g00536 Cma-Chr5:2605144 3.61E-60 tandem
Cma12g00207 Cma-Chr12:975513 Cma05g00535 Cma-Chr5:2594145 2.28E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35063 PF06203 CCT 1.60E-13 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00535 - - mcha:111004894 622.083