Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00536 ATGATATTATTTAAAATCACTAATCTACATTCCTCTGTCGAACGCCTCTCTCACTTCCTAGAGTTCCTAAACGCAACGACGGCCGCTTTTTCTCGCCGGCCATTCCCGATTTCCCCATTCTGCAATGCTGCAAACACCTTTGATTTTGTTCTGCCGGAGTTAATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCCGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCACTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGTGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGGCCATCTGGGCCTAGATCACTTTGTAACGCCTGCGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCGTTTCTTTCCCAAATGGTGATACCTCTACTTTAATGGCTGAGCATTAG 1053 49.86 MILFKITNLHSSVERLSHFLEFLNATTAAFSRRPFPISPFCNAANTFDFVLPELMYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGTGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCESDAAKDFDCRRGNHAPSNLVSFPNGDTSTLMAEH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2605144 2611324 - CmaCh05G005360.1 Cma05g00536 294654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00536 350 ProSiteProfiles Tify domain profile. 125 160 IPR010399 -
Cma05g00536 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 304 - -
Cma05g00536 350 Gene3D - 256 306 IPR013088 GO:0006355|GO:0008270
Cma05g00536 350 PANTHER GATA TRANSCRIPTION FACTOR 28 79 326 IPR045280 GO:0006355
Cma05g00536 350 SMART tify_2 125 160 IPR010399 -
Cma05g00536 350 Pfam tify domain 127 159 IPR010399 -
Cma05g00536 350 Pfam CCT motif 192 234 IPR010402 GO:0005515
Cma05g00536 350 SMART GATA_3 254 307 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 PANTHER GATA TRANSCRIPTION FACTOR 25 79 326 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 333 350 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 225 240 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 330 350 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 225 257 - -
Cma05g00536 350 ProSitePatterns GATA-type zinc finger domain. 260 287 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 CDD ZnF_GATA 259 306 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 Pfam GATA zinc finger 260 296 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 ProSiteProfiles GATA-type zinc finger domain profile. 259 313 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 ProSiteProfiles CCT domain profile. 192 234 IPR010402 GO:0005515
Cma05g00536 350 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00536 Cma-Chr5:2605144 Cma12g00207 Cma-Chr12:975513 4.63E-53 dispersed
Cma05g00535 Cma-Chr5:2594145 Cma05g00536 Cma-Chr5:2605144 3.61E-60 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35064 PF06203 CCT 4.30E-15 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00536 - - cpep:111798216 526.939