Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00536 ATGATATTATTTAAAATCACTAATCTACATTCCTCTGTCGAACGCCTCTCTCACTTCCTAGAGTTCCTAAACGCAACGACGGCCGCTTTTTCTCGCCGGCCATTCCCGATTTCCCCATTCTGCAATGCTGCAAACACCTTTGATTTTGTTCTGCCGGAGTTAATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCCGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCACTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGTGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGGCCATCTGGGCCTAGATCACTTTGTAACGCCTGCGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCGTTTCTTTCCCAAATGGTGATACCTCTACTTTAATGGCTGAGCATTAG 1053 49.86 MILFKITNLHSSVERLSHFLEFLNATTAAFSRRPFPISPFCNAANTFDFVLPELMYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGTGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCESDAAKDFDCRRGNHAPSNLVSFPNGDTSTLMAEH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2605144 2611324 - CmaCh05G005360.1 Cma05g00536 294654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00536 350 ProSiteProfiles Tify domain profile. 125 160 IPR010399 -
Cma05g00536 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 304 - -
Cma05g00536 350 Gene3D - 256 306 IPR013088 GO:0006355|GO:0008270
Cma05g00536 350 PANTHER GATA TRANSCRIPTION FACTOR 28 79 326 IPR045280 GO:0006355
Cma05g00536 350 SMART tify_2 125 160 IPR010399 -
Cma05g00536 350 Pfam tify domain 127 159 IPR010399 -
Cma05g00536 350 Pfam CCT motif 192 234 IPR010402 GO:0005515
Cma05g00536 350 SMART GATA_3 254 307 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 PANTHER GATA TRANSCRIPTION FACTOR 25 79 326 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 333 350 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 225 240 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 330 350 - -
Cma05g00536 350 MobiDBLite consensus disorder prediction 225 257 - -
Cma05g00536 350 ProSitePatterns GATA-type zinc finger domain. 260 287 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 CDD ZnF_GATA 259 306 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 Pfam GATA zinc finger 260 296 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 ProSiteProfiles GATA-type zinc finger domain profile. 259 313 IPR000679 GO:0006355|GO:0043565
Cma05g00536 350 ProSiteProfiles CCT domain profile. 192 234 IPR010402 GO:0005515
Cma05g00536 350 MobiDBLite consensus disorder prediction 241 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00536 - - - cpep:111798216 526.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00536 Cma-Chr5:2605144 Cma12g00207 Cma-Chr12:975513 4.63E-53 dispersed
Cma05g00535 Cma-Chr5:2594145 Cma05g00536 Cma-Chr5:2605144 3.61E-60 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma17g00207 CCT 1 180 Tify Gene Family AT4G14713 52.1 2.7e-45 179.5
Cma08g01125 . 1 180 Tify Gene Family AT4G14713 51.6 3.9e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35064 PF06203 CCT 4.30E-15 CL0281 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00536 Cma_Chr05 FPKM 7.168128 6.186651 7.75912 7.175104 7.083411 6.708877 6.4115 11.20518 10.400111 9.192502