Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00538 ATGCCGGCCAAGGACAGCTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAGGTGGGACTTCCTACACCTGTATATGAGACTATCAAAGAAGGGCCTTCCCATGAGCCAACATTTTATTCTACGGTGATCGTTAAAGATGTTAGATATGATTCACTTCCTGGATTCTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTGATGGAGCTGTCGAAATCTAATGATCTTAATCCACATGTCTCTCAACCTGTGCATGAAACAGGACTATGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAATGCAAAAAAGATGATAGTTCGGGCAGAACTTCCCTTTTCTCGTGTACAGTAGAAATTGGAGGGATCCGCTACATTGGTGCTGCAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCTATCCAGTCTTGCCCGACTTCGCTGCCTGAGAATTCTGTCAATCAAGTTCAGCTCACTGTGATCCCATGCAAGAGGAAAGAAGCAGCAGATTTCTCAGTTAAACCGAAAACTACTGGAGCACCCCGAATAAAGAAAGGGCGATTCAAGAAGGTGGTGTCAAAGAAAAAAGACAACAGAAGTGGACTGCCCAATTTGGAGTTTAACTTTGATAGATCATCCTCCTTCGAACCTCTTGAAACTACTGGGGTCGACCCGGTGCCAGGTTTAGGGGAATCTGTTGAATTAGCCAAAGATACCGTGCTGAATTCCGAGTACAAAACGACAGACCTAAGCTCAAGTGGCAATGATGTACTGGTCTCTAACATCCAAAGCGACACGCCTCAGCTCCCGAATGGTAATATTGGAAATGATCGTTTGGATACTTTCAGTTCCAATCAAATAAACTGTTCAACTTCTGATGTTATGAGTTTTCCTCTCTCTGACGTTCAAGCTACTTGTGGTGAAGTGGCGAATGTGGCCACTGGAATGACAGGGGAGCTTCACTGA 1047 43.65 MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVNQVQLTVIPCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKKDNRSGLPNLEFNFDRSSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLPNGNIGNDRLDTFSSNQINCSTSDVMSFPLSDVQATCGEVANVATGMTGELH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2618233 2621579 + CmaCh05G005380.1 Cma05g00538 294656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00538 348 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Cma05g00538 348 Pfam Double-stranded RNA binding motif 17 81 IPR014720 -
Cma05g00538 348 SMART DRBM_3 102 169 IPR014720 -
Cma05g00538 348 SMART DRBM_3 16 83 IPR014720 -
Cma05g00538 348 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Cma05g00538 348 PANTHER RIBONUCLEASE III 1 226 IPR011907 GO:0003723|GO:0004525|GO:0006364
Cma05g00538 348 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725
Cma05g00538 348 Gene3D - 98 170 - -
Cma05g00538 348 SUPERFAMILY dsRNA-binding domain-like 16 87 - -
Cma05g00538 348 Gene3D - 16 97 - -
Cma05g00538 348 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 1 226 IPR031147 GO:0003725
Cma05g00538 348 SUPERFAMILY dsRNA-binding domain-like 103 173 - -
Cma05g00538 348 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00538 - - - csv:101207053 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00538 Cma-Chr5:2618233 Cma20g00485 Cma-Chr20:2346450 8.61E-21 dispersed
Cma05g00538 Cma-Chr5:2618233 Cma12g00817 Cma-Chr12:5968620 1.55E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g526 . . Bda01g00907 . . . . . . . . . . . . . . . . . . . . . Cla08g01158 Cam08g1618 Cec08g1193 Cco08g1316 Clacu08g1317 . Cre08g1102 Cone4ag1293 Cone7ag0862 . . . . . Cme03g01812 . . . . Bpe02g01145 . . . . . . . Cma05g00538 Car05g00485 . Cpe11g00474 . . . . . . . . . . . . . . . . . Chy03g01315 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012839 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00538 Cma_Chr05 FPKM 14.65203 15.310473 37.969788 40.112926 22.863573 23.934914 27.710125 28.596445 30.85581 31.920017