Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00546 | ATGGTTCATCATGGTTCTACCCAATTTTCGCATAAATTGGGAATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGTCAAGGGAAAGGCTCGTCTACATCTTGTTACTATCGTTCCAACATCACACGGTCTGAGGCACAATTCTGTTAGTCTTCAGCTCTTAGGCAGTGTAAGTCGCTCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAACCTAGTGGCGGAGCCGGGAATGCTGTTTTAAAATCTGCAGCTGTGGTTTTGACAAGATATTATGATGCGTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGTAGTTGGAAGAAAAGTAGTACATACTTTGTTACGAGTTCTTACGTTCAACCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTCTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGTTTGATTCAACAAGTACAAAAGTTTTCGTCTGAATCAAATGACTCGAGTGATACAAGAAATATGGGCTATGATTTTGCTGGTAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTGACTGCTGGGGGTCTCGGAACTGTATTGCTTACTCTTGCGGGTCGTGAGATATTTACCAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAAACAAAGATTAATGGATATGAAGTCTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCACCAACCATTATCCGAGGAGATGATCGTGAAGCAGTTCATATTCCGAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATAGTAGCTGATATGCGCAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACATCAATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCCACTCCCATTCGCACTGTTCAGAAAATATATGGTGAGGTTGACTTGGAGAACGTACCATTTTCCGAGACCATGTATTCACATACGGGGGCTACTAACCGTCCACTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAGAGTCTCTAGAAGTCCGACTCGCTCGTCAAACGAAGAAAAAGATGCTAAACAAGAGACAGTCTCGACTACAGGGACGAAAGCCCCCGACACAGCTGGTTCAACATCAAGTATTGATATGAAAACAGATGATAGAAAGCCAGTTACTGGTACTGCGCCTAAGCCGCCTTCAACAGGGTCGTCCGTGTCGAACACTCAGACTCAGGATCTATCAACCAGTACTCCAGAAGAAAGCAGCATGGAAAAGGCAGTAACAAACAATGAGATAAAAGGAGAAAAGAAAGATGTGATAGGACTGAATTCCAAGCTGCCCAAAAGATCACCCTCAGCTTCCAGTTCCGGCAGCGAGAAAGCTGATATTCCTCCGCCCTCAAGCTTGCAGAATAATAAGCAAGATGGCGAGAAGGCCTCTGCATCATCAGTAGTGGGGAGGCCACCATTGGAGGAGAATATCGTCCTTGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTCGGATCCGTCTCCCTTTCACTCTCCTGCTGATTCAAAAGAAATCTCCACACAGAGGAATGGGAGCGAGTTTCCTCCCAATAGCAAGGATTTGAGAGATGGCCAGTTGCCTGCAGTTCCTGGTGCGACGAAAAATGATTGA | 2148 | 43.62 | MVHHGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSHGLRHNSVSLQLLGSVSRSMYPVSSRANVFVCRSVLEPSGGAGNAVLKSAAVVLTRYYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYFVTSSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFSSESNDSSDTRNMGYDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKINGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEVDLENVPFSETMYSHTGATNRPLLLIEPSYKVNGDDKARVSRSPTRSSNEEKDAKQETVSTTGTKAPDTAGSTSSIDMKTDDRKPVTGTAPKPPSTGSSVSNTQTQDLSTSTPEESSMEKAVTNNEIKGEKKDVIGLNSKLPKRSPSASSSGSEKADIPPPSSLQNNKQDGEKASASSVVGRPPLEENIVLGVALEGSKRTLPIDEDSDPSPFHSPADSKEISTQRNGSEFPPNSKDLRDGQLPAVPGATKND | 715 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2650712 | 2655532 | + | CmaCh05G005460.1 | Cma05g00546 | 294664 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 496 | 715 | - | - | |
| Cma05g00546 | 715 | Gene3D | - | 298 | 353 | IPR023408 | - | |
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 553 | 585 | - | - | |
| Cma05g00546 | 715 | Gene3D | - | 192 | 296 | - | - | |
| Cma05g00546 | 715 | Pfam | Mechanosensitive ion channel | 239 | 446 | IPR006685 | GO:0016020|GO:0055085 | |
| Cma05g00546 | 715 | SUPERFAMILY | Sm-like ribonucleoproteins | 282 | 352 | IPR010920 | - | |
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 662 | 676 | - | - | |
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 586 | 600 | - | - | |
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 679 | 694 | - | - | |
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 521 | 538 | - | - | |
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 604 | 636 | - | - | |
| Cma05g00546 | 715 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 1 | 706 | - | - | |
| Cma05g00546 | 715 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 1 | 706 | IPR045042 | - | |
| Cma05g00546 | 715 | MobiDBLite | consensus disorder prediction | 496 | 520 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma12g00875 | Cma-Chr12:6573278 | Cma05g00546 | Cma-Chr5:2650712 | 7.93E-08 | transposed | |
| Cma16g00747 | Cma-Chr16:3999600 | Cma05g00546 | Cma-Chr5:2650712 | 0 | transposed | |
| Cma12g00199 | Cma-Chr12:935507 | Cma05g00546 | Cma-Chr5:2650712 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00546 | K22047 | - | csv:101213477 | 1177.54 |