Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00550 | ATGTTATCCAAATTCCATCTCAGTCATCACTTTACCCACCCTCCGCCCCATCAACCGGAGGATGAACCTACCGCCGCCGTGCCTTTGCCGTTCAAACCCCTCCCGGAATCAATCTCTGCCGCCGATGATTCCACCATCGAGGTGATCCGGCGGCCTAGGGGTCGCCCACCGGGCTCCAAAAACAAACCGAAACTGCCTCTCGTCATAACCCGGGAACCCGAACCGACTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTTACGATTTTGCCGTCAGAAAAATACGGGCCTTTGTGTTCTGAACGGCTCCGGCACCGTTGCTAATGTCTCTCTCCGCCAACCTTCCGCTACCCCAAGCGCCACCGTCACATTTCACGGCTGTTTTGAGATCCTCTCCATTTCCGCCACCGTGTTTCCTGAAACGATGTCGTTTCCAGTCCCTAACGGTTTCACCATCTCCCTCGCTGGACATCAGGGTCAAATCGTCGGCGGCATGGTTGCCGGCGCCTTAATCTCTGCCGGTACAGTTTTCGTCATCGCCTCGTCGTTCAACAATCCGATGTACCTCCGGCTTCCCGAACTGGATGAGCTCAAGAATTCGGAATCCGGCAGCGGCGAAGTTCACTCCCCACATGTCTCCGTCGCCGGAGATAGTAGCGGGCACAGACCCGGGCAGAGTCGAGGGAGCGGGCAGCTTGTGGAATCCCGCGGAATGGCTTTAATGAGTTGCCACGCGCCGTCCGACGTAGTATGGGCGCCGACGGCGAGGCAACCGCCACCGCCGCCGTACTAA | 816 | 57.6 | MLSKFHLSHHFTHPPPHQPEDEPTAAVPLPFKPLPESISAADDSTIEVIRRPRGRPPGSKNKPKLPLVITREPEPTMRPYVLEVPGGNDVVEAILRFCRQKNTGLCVLNGSGTVANVSLRQPSATPSATVTFHGCFEILSISATVFPETMSFPVPNGFTISLAGHQGQIVGGMVAGALISAGTVFVIASSFNNPMYLRLPELDELKNSESGSGEVHSPHVSVAGDSSGHRPGQSRGSGQLVESRGMALMSCHAPSDVVWAPTARQPPPPPY | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2687553 | 2688368 | + | CmaCh05G005500.1 | Cma05g00550 | 294668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00550 | 271 | MobiDBLite | consensus disorder prediction | 207 | 245 | - | - | |
Cma05g00550 | 271 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 78 | 193 | IPR005175 | - | |
Cma05g00550 | 271 | CDD | DUF296 | 78 | 191 | IPR005175 | - | |
Cma05g00550 | 271 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 76 | 200 | - | - | |
Cma05g00550 | 271 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Cma05g00550 | 271 | ProSiteProfiles | PPC domain profile profile. | 74 | 218 | IPR005175 | - | |
Cma05g00550 | 271 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 35 | 270 | IPR014476 | GO:0003680 | |
Cma05g00550 | 271 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED | 35 | 270 | - | - | |
Cma05g00550 | 271 | Gene3D | - | 77 | 220 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01644 | Cma-Chr1:11260554 | Cma05g00550 | Cma-Chr5:2687553 | 5.55E-87 | dispersed | |
Cma05g00550 | Cma-Chr5:2687553 | Cma09g00592 | Cma-Chr9:2739782 | 1.11E-89 | dispersed | |
Cma10g00894 | Cma-Chr10:4431382 | Cma05g00550 | Cma-Chr5:2687553 | 1.31E-46 | dispersed | |
Cma12g00196 | Cma-Chr12:911548 | Cma05g00550 | Cma-Chr5:2687553 | 7.27E-118 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00550 | - | - | bhj:120075835 | 416.387 |