Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00550 ATGTTATCCAAATTCCATCTCAGTCATCACTTTACCCACCCTCCGCCCCATCAACCGGAGGATGAACCTACCGCCGCCGTGCCTTTGCCGTTCAAACCCCTCCCGGAATCAATCTCTGCCGCCGATGATTCCACCATCGAGGTGATCCGGCGGCCTAGGGGTCGCCCACCGGGCTCCAAAAACAAACCGAAACTGCCTCTCGTCATAACCCGGGAACCCGAACCGACTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTTACGATTTTGCCGTCAGAAAAATACGGGCCTTTGTGTTCTGAACGGCTCCGGCACCGTTGCTAATGTCTCTCTCCGCCAACCTTCCGCTACCCCAAGCGCCACCGTCACATTTCACGGCTGTTTTGAGATCCTCTCCATTTCCGCCACCGTGTTTCCTGAAACGATGTCGTTTCCAGTCCCTAACGGTTTCACCATCTCCCTCGCTGGACATCAGGGTCAAATCGTCGGCGGCATGGTTGCCGGCGCCTTAATCTCTGCCGGTACAGTTTTCGTCATCGCCTCGTCGTTCAACAATCCGATGTACCTCCGGCTTCCCGAACTGGATGAGCTCAAGAATTCGGAATCCGGCAGCGGCGAAGTTCACTCCCCACATGTCTCCGTCGCCGGAGATAGTAGCGGGCACAGACCCGGGCAGAGTCGAGGGAGCGGGCAGCTTGTGGAATCCCGCGGAATGGCTTTAATGAGTTGCCACGCGCCGTCCGACGTAGTATGGGCGCCGACGGCGAGGCAACCGCCACCGCCGCCGTACTAA 816 57.6 MLSKFHLSHHFTHPPPHQPEDEPTAAVPLPFKPLPESISAADDSTIEVIRRPRGRPPGSKNKPKLPLVITREPEPTMRPYVLEVPGGNDVVEAILRFCRQKNTGLCVLNGSGTVANVSLRQPSATPSATVTFHGCFEILSISATVFPETMSFPVPNGFTISLAGHQGQIVGGMVAGALISAGTVFVIASSFNNPMYLRLPELDELKNSESGSGEVHSPHVSVAGDSSGHRPGQSRGSGQLVESRGMALMSCHAPSDVVWAPTARQPPPPPY 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2687553 2688368 + CmaCh05G005500.1 Cma05g00550 294668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00550 271 MobiDBLite consensus disorder prediction 207 245 - -
Cma05g00550 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 193 IPR005175 -
Cma05g00550 271 CDD DUF296 78 191 IPR005175 -
Cma05g00550 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 200 - -
Cma05g00550 271 MobiDBLite consensus disorder prediction 1 65 - -
Cma05g00550 271 ProSiteProfiles PPC domain profile profile. 74 218 IPR005175 -
Cma05g00550 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 270 IPR014476 GO:0003680
Cma05g00550 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 35 270 - -
Cma05g00550 271 Gene3D - 77 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01644 Cma-Chr1:11260554 Cma05g00550 Cma-Chr5:2687553 5.55E-87 dispersed
Cma05g00550 Cma-Chr5:2687553 Cma09g00592 Cma-Chr9:2739782 1.11E-89 dispersed
Cma10g00894 Cma-Chr10:4431382 Cma05g00550 Cma-Chr5:2687553 1.31E-46 dispersed
Cma12g00196 Cma-Chr12:911548 Cma05g00550 Cma-Chr5:2687553 7.27E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00550 - - bhj:120075835 416.387