Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00559 ATGACCGCCCGCGGATCTTTACCACACGGCGAAAACGCTAATCCCTCTCCTTTTCTCTTTGTATCCTGTTCTTCTGCTCGCCGGAGTTCAAAAATGGCCACCGCCGTGCCGGAAAATCTCTCTCGTGAGCAATATGTGTACCTAGCAAAGCTTGCTGAGCAGGCCGAAAGATATGAGGAGATGGTTCAGTTTATGCAGAAACTTGTTCTTGGTTCAACCCCAGGCTCCGAGCTCTCTGTGGAGGAGCGAAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGCTCACTTCGAGCCGCTTGGCGGATTGTCTCCTCCATCGAGCAGAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTATAGATCAAATGTTGAGAATGAGCTTTCCGAGGTCTGTGCGAGTATTTTGAAGCTTTTGGACTCGAATCTTATTCCCTCCGCCACTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAGGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGGGATGAGAGGAAAACCGCTGCTGAGGATACTATGCTGGCTTATAAGGCTGCTCAGGATGTTGCAGCTGCAAATCTTGCACCCACTCATCCGATTAGGCTGGGGCTGGCACTCAATTTCTCTGTGTTTTATTTCGAGATTCTGAATCAGTCCGACAAAGCTTGTAGCATGGCTAAGGAGGCATTTGAGGAAGCCATTGCTGAGCTAGATACTTTGGGTGAAGAATCATACAAGGATAGTACCCTCATCATGCAGCTATTGAGGGACAACCTCACTCTCTGGACTTCAGATGCGCAGGACCAGTTAGACGAGTCATAG 852 48.12 MTARGSLPHGENANPSPFLFVSCSSARRSSKMATAVPENLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSNVENELSEVCASILKLLDSNLIPSATASESKVFYLKMKGDYHRYLAEFKVGDERKTAAEDTMLAYKAAQDVAAANLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2740473 2744123 + CmaCh05G005590.1 Cma05g00559 294677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00559 283 PRINTS 14-3-3 protein zeta signature 219 245 IPR000308 -
Cma05g00559 283 PRINTS 14-3-3 protein zeta signature 77 106 IPR000308 -
Cma05g00559 283 PRINTS 14-3-3 protein zeta signature 126 150 IPR000308 -
Cma05g00559 283 PRINTS 14-3-3 protein zeta signature 246 275 IPR000308 -
Cma05g00559 283 PRINTS 14-3-3 protein zeta signature 157 179 IPR000308 -
Cma05g00559 283 PRINTS 14-3-3 protein zeta signature 192 218 IPR000308 -
Cma05g00559 283 PANTHER BNAC02G00320D PROTEIN 39 279 - -
Cma05g00559 283 SMART 1433_4 42 282 IPR023410 -
Cma05g00559 283 PANTHER 14-3-3 PROTEIN 39 279 IPR000308 -
Cma05g00559 283 ProSitePatterns 14-3-3 proteins signature 2. 255 274 IPR023409 -
Cma05g00559 283 Gene3D - 21 283 IPR036815 -
Cma05g00559 283 SUPERFAMILY 14-3-3 protein 41 275 IPR036815 -
Cma05g00559 283 Coils Coil 48 68 - -
Cma05g00559 283 Pfam 14-3-3 protein 48 273 IPR023410 -
Cma05g00559 283 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Cma05g00559 283 PIRSF 14-3-3 37 283 IPR000308 -
Cma05g00559 283 ProSitePatterns 14-3-3 proteins signature 1. 83 93 IPR023409 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00559 Cma-Chr5:2740473 Cma14g01134 Cma-Chr14:8781087 7.02E-135 dispersed
Cma12g00185 Cma-Chr12:848110 Cma05g00559 Cma-Chr5:2740473 8.37E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00559 K06630 - csv:101222827 469.544