Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00561 | ATGGTGGTTAGAAAAGTCGGCATTTACGAGGTCGGAAGGACGATTGGGGAAGGTACTTTTGCAGAGGTGAAGTTCGCTCAGAACACTGAGACTGGTGAGAGTGTTGCTATGAAAGTCCTCGACCGAAGCACCATAATCAAGCACAAGATGGTCGATCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTACGTTGTTCTTGCAAGCCGTACTAAGATTTATATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATCATGGCCGGCTTAGTGAAGCTGAATCCAGGAAGTACTTCCAGCAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGAATCTGCTACTCGACTCCCTAGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAACCTACTCCGCACAACGTGTGGGACTCCAAACTATGTAGCACCAGAGATTGAGAGAGCTGACTTTTCATGTCCATCTTGGTTCCCTGTGCTTGATCCATAG | 564 | 44.15 | MVVRKVGIYEVGRTIGEGTFAEVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVLASRTKIYIILEYITGGELFDKIVHHGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKNLLLDSLGNLKISDFGLSALPEQGVNLLRTTCGTPNYVAPEIERADFSCPSWFPVLDP | 187 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2752550 | 2755505 | - | CmaCh05G005610.1 | Cma05g00561 | 294679 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00561 | 187 | ProSitePatterns | Protein kinases ATP-binding region signature. | 15 | 47 | IPR017441 | GO:0005524 | |
| Cma05g00561 | 187 | Pfam | Protein kinase domain | 9 | 171 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma05g00561 | 187 | PANTHER | SERINE/THREONINE KINASE | 6 | 171 | - | - | |
| Cma05g00561 | 187 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 172 | IPR011009 | - | |
| Cma05g00561 | 187 | Gene3D | Transferase(Phosphotransferase) domain 1 | 3 | 179 | - | - | |
| Cma05g00561 | 187 | ProSiteProfiles | Protein kinase domain profile. | 9 | 187 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma05g00561 | 187 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 8 | 6 | 171 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00561 | Cma-Chr5:2752550 | Cma10g00544 | Cma-Chr10:2500684 | 3.96E-88 | dispersed | |
| Cma12g00176 | Cma-Chr12:803794 | Cma05g00561 | Cma-Chr5:2752550 | 9.47E-121 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 68576 | PF00069 | Pkinase | 8.30E-44 | CL0016 | Cma | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00561 | - | - | csv:101222107 | 318.161 |